PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016471039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | DBB | ||||||||
Protein Properties | Length: 227aa MW: 25286.9 Da PI: 6.83 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.8 | 6.8e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC +C + H H++ XP_016471039.1 4 QCDVCEKAQATVICCADEAALCTKCDIKVHAAnkfaskHQR 44 7******99*********************65667777765 PP | |||||||
2 | zf-B_box | 29.4 | 1.6e-09 | 53 | 96 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + ++C+ +++k + +fC +++ l+C+ C +++H+ H+ XP_016471039.1 53 KLPVCDICQDKTAFIFCVEDRALFCNVCDESIHSAssslsakHQ 96 7899*****************************65667777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.243 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.52E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 7.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.67 | 52 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-11 | 52 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.7E-8 | 53 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.20E-4 | 55 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MKIQCDVCEK AQATVICCAD EAALCTKCDI KVHAANKFAS KHQRLLLQCL SNKLPVCDIC 60 QDKTAFIFCV EDRALFCNVC DESIHSASSS LSAKHQRLLA TGIRLGLSSS YYNDAIKSQM 120 ERQPPKQSSQ QLSIETTSQH LPNIALPSLA VDGLLGFSER ESNHKKEQLE LDELKWLKDI 180 GLFGEQPAAA VPDMSISQSR NVDMPNKKPR VEIPYHNEYY FTVPNLG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ299901 | 2e-77 | DQ299901.1 Solanum sogarandinum zinc finger B-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016471039.1 | 1e-169 | PREDICTED: B-box zinc finger protein 24-like | ||||
Swissprot | Q9SID1 | 6e-72 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A1S4A376 | 1e-168 | A0A1S4A376_TOBAC; B-box zinc finger protein 24-like | ||||
STRING | XP_009601506.1 | 1e-167 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5410 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 1e-70 | salt tolerance homologue |
Publications ? help Back to Top | |||
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