PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016471011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27011.4 Da PI: 6.9798 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.00038 | 36 | 84 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r + erE+ R+++N+ f L l + + + Ka+iL +A +++k+ XP_016471011.1 36 KRIHKAEREKLKREHLNELFLGLANALELS----EQMNGKASILNEAARFVKD 84 688899*********************998....68899********999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.7E-6 | 32 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-10 | 32 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.429 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDTESPAPIH EKDTTAAETS LDSSHLGKKN QKKAPKRIHK AEREKLKREH LNELFLGLAN 60 ALELSEQMNG KASILNEAAR FVKDILSQIK HLRTENTTLL SESQYLSVEK KELQDETSAL 120 EAEIGRLQNE VKAREAKTNL DLNLAPPEIQ HPEFALQNNY MRLPASAHAF QDSQIMNPAY 180 VFPFSSNPQV HLAPDATKST STPTSTVKKP QARYPTPADV WPSQIFEKRP RLLGQEVQDG 240 A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ423078 | 1e-150 | DQ423078.2 Nicotiana tomentosiformis cultivar TA3349 DNA-binding protein (At3g47640) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770548.1 | 1e-177 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_009770549.1 | 1e-177 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_016471010.1 | 1e-177 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_016471011.1 | 1e-177 | PREDICTED: transcription factor bHLH47-like | ||||
TrEMBL | A0A1S4A365 | 1e-176 | A0A1S4A365_TOBAC; transcription factor bHLH47-like | ||||
TrEMBL | A0A1U7VVZ4 | 1e-176 | A0A1U7VVZ4_NICSY; transcription factor bHLH47-like | ||||
STRING | XP_009770548.1 | 1e-177 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 6e-43 | bHLH family protein |