PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470806.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24639.5 Da    PI: 9.529
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.4e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+ly+++s
  XP_016470806.1  9 KRIENLSSRQVTFSKRRNGLLKKANELSVLCDAEVALIIFSQKGRLYDFAS 59
                    79***********************************************86 PP
2K-box652.6e-22841701097
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      ++ +e+l++e a++ k+ie L+ ++R+l+G++L+s+s+ eLq++ ++Le+sl++iR++K +l++++ie l+ +   l een +Lr+k
  XP_016470806.1  84 LQQYMEHLKHETANMAKKIEILEVSKRKLMGQGLGSCSMDELQEIDSKLERSLENIRARKAQLFKDEIESLKARCLLL-EENANLREK 170
                     467789******************************************************************998655.567778887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.707161IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-30323IPR002100Transcription factor, MADS-box
CDDcd002651.91E-40371No hitNo description
SuperFamilySSF554552.35E-32389IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2187171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.71488177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVRGKVQMKR IENLSSRQVT FSKRRNGLLK KANELSVLCD AEVALIIFSQ KGRLYDFASS  60
NMQKTIERYH ERARETMVDN STELQQYMEH LKHETANMAK KIEILEVSKR KLMGQGLGSC  120
SMDELQEIDS KLERSLENIR ARKAQLFKDE IESLKARCLL LEENANLREK CRLMPTPSAT  180
PPTQRKERGN CSKNAQNSEV ETELFIGLPV MRCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19171171Myocyte-specific enhancer factor 2B
1tqe_Q2e-19171171Myocyte-specific enhancer factor 2B
1tqe_R2e-19171171Myocyte-specific enhancer factor 2B
1tqe_S2e-19171171Myocyte-specific enhancer factor 2B
6c9l_A2e-19171171Myocyte-specific enhancer factor 2B
6c9l_B2e-19171171Myocyte-specific enhancer factor 2B
6c9l_C2e-19171171Myocyte-specific enhancer factor 2B
6c9l_D2e-19171171Myocyte-specific enhancer factor 2B
6c9l_E2e-19171171Myocyte-specific enhancer factor 2B
6c9l_F2e-19171171Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470806.11e-156PREDICTED: MADS-box protein AGL42-like isoform X2
SwissprotQ9FIS14e-76AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A1S4A2K91e-155A0A1S4A2K9_TOBAC; MADS-box protein AGL42-like isoform X2
STRINGXP_009766770.11e-133(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-78AGAMOUS-like 42