PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016470596.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 20547.8 Da PI: 9.5076 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4.1e-13 | 75 | 155 | 13 | 80 |
TT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 13 sgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ++r+ +p +f +e +++k +s++++++d++g+ e+k++ +++ +r+vl kGW++ v an+L+ gD+v XP_016470596.1 75 LSRFLIPGTFDKELlknlsgeerikleDNNKDKSFKVKVMDQEGNFHEMKFTRWQSLKRFVLNKGWNNLVVANNLQKGDTV 155 46788888888777888888888888877888************999999999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.559 | 63 | 175 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-13 | 67 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-15 | 69 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.7E-10 | 76 | 155 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.54E-12 | 105 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MTRIKLFGKE IEVEEEPKTI KLFGIRIFPC NVEPEQEQEN LPPTNMYRAI RLAGGSRLVY 60 IGRKKAEESD INPELSRFLI PGTFDKELLK NLSGEERIKL EDNNKDKSFK VKVMDQEGNF 120 HEMKFTRWQS LKRFVLNKGW NNLVVANNLQ KGDTVDLWHF RIHLQLCFAI NIIKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016470596.1 | 1e-126 | PREDICTED: putative B3 domain-containing protein At3g49610 | ||||
TrEMBL | A0A1S4A201 | 1e-125 | A0A1S4A201_TOBAC; putative B3 domain-containing protein At3g49610 | ||||
STRING | XP_009605370.1 | 1e-124 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 1e-08 | B3 family protein |