PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470541.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 492aa    MW: 51505.8 Da    PI: 7.8923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-124973327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG+C yG+rC+F+H+p
  XP_016470541.1 49 EADCIYYLRTGFCGYGSRCRFNHPP 73
                    689********************97 PP
2zf-CCCH375.6e-12100124327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_016470541.1 100 QPVCQYYMRTGMCKFGASCKYHHPR 124
                     689********************96 PP
3zf-CCCH35.91.2e-11145170227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C f+++tG+Ck+G +CkF+H++
  XP_016470541.1 145 GEKECLFYMKTGQCKFGITCKFHHPQ 170
                     7899********************97 PP
4zf-CCCH35.81.4e-11315341127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++++G Ck+G++C+++H+p
  XP_016470541.1 315 PGQPECQYYMKYGDCKFGSSCRYHHPP 341
                     5789*********************97 PP
5zf-CCCH35.31.9e-11363387327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C++++++G Ck+G++CkF H++
  XP_016470541.1 363 APICSHYSQNGVCKFGPSCKFDHPM 387
                     589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7094674IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-64673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-64974IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-104973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-55272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55497125IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-797124IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5102124IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446143171IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9145170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6145171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389314342IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6314341IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5318341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6359386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756360388IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7360387IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8363387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5365385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MERYSGTQAM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGP ESYPERPNEA DCIYYLRTGF  60
CGYGSRCRFN HPPDRNLVMG AARAIGGGGG EGEYPERVGQ PVCQYYMRTG MCKFGASCKY  120
HHPRQGGGSP ALMTHNIYGY PLRPGEKECL FYMKTGQCKF GITCKFHHPQ PAGVQVPASA  180
ARPGAFPLPA AVPPPATYPT VQSPSVQSAQ QYGVIAGNWP VVRPTLLPGS YLPGTYGPML  240
FPPGMVPVPG WTPYPASASQ LPSLTTQPAA GAGPVYGLTQ LSASAPSYMG PHTSLTASIG  300
PSGSIQKEHA FPERPGQPEC QYYMKYGDCK FGSSCRYHHP PEWSGPKSGF ILSAMGLPLR  360
PGAPICSHYS QNGVCKFGPS CKFDHPMGIS YSPSASSLVD MPVAPYPVGS SVGTLAPSSS  420
SSDLKPELVS GSTKDAFSTQ TSSMSTSSGS VGSMFSKGGP VSHSGAQQSI QSSTSSSGSS  480
STGCDGEAQT SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470541.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X2
SwissprotQ84W911e-158C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4A1U70.0A0A1S4A1U7_TOBAC; zinc finger CCCH domain-containing protein 34-like isoform X2
STRINGXP_009802825.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-151C3H family protein