PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470540.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 496aa    MW: 51965.4 Da    PI: 7.8923
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-124973327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG+C yG+rC+F+H+p
  XP_016470540.1 49 EADCIYYLRTGFCGYGSRCRFNHPP 73
                    689********************97 PP
2zf-CCCH375.6e-12100124327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_016470540.1 100 QPVCQYYMRTGMCKFGASCKYHHPR 124
                     689********************96 PP
3zf-CCCH35.51.7e-11149174227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C f+++tG+Ck+G +CkF+H++
  XP_016470540.1 149 GEKECLFYMKTGQCKFGITCKFHHPQ 174
                     6789********************97 PP
4zf-CCCH35.81.4e-11319345127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++++G Ck+G++C+++H+p
  XP_016470540.1 319 PGQPECQYYMKYGDCKFGSSCRYHHPP 345
                     5789*********************97 PP
5zf-CCCH35.31.9e-11367391327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C++++++G Ck+G++CkF H++
  XP_016470540.1 367 APICSHYSQNGVCKFGPSCKFDHPM 391
                     589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7094674IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-64673IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-104973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-64974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-55272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55497125IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-797124IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5102124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.939147175IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4147174IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-9149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6150175IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389318346IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5322345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756364392IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7364391IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8367391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5369389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MERYSGTQAM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGP ESYPERPNEA DCIYYLRTGF  60
CGYGSRCRFN HPPDRNLVMG AARAIGGGGG EGEYPERVGQ PVCQYYMRTG MCKFGASCKY  120
HHPRQGGGSP ALMTHNIYGY PLRPFLAQGE KECLFYMKTG QCKFGITCKF HHPQPAGVQV  180
PASAARPGAF PLPAAVPPPA TYPTVQSPSV QSAQQYGVIA GNWPVVRPTL LPGSYLPGTY  240
GPMLFPPGMV PVPGWTPYPA SASQLPSLTT QPAAGAGPVY GLTQLSASAP SYMGPHTSLT  300
ASIGPSGSIQ KEHAFPERPG QPECQYYMKY GDCKFGSSCR YHHPPEWSGP KSGFILSAMG  360
LPLRPGAPIC SHYSQNGVCK FGPSCKFDHP MGISYSPSAS SLVDMPVAPY PVGSSVGTLA  420
PSSSSSDLKP ELVSGSTKDA FSTQTSSMST SSGSVGSMFS KGGPVSHSGA QQSIQSSTSS  480
SGSSSTGCDG EAQTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470540.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-156C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4A1R40.0A0A1S4A1R4_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X1
STRINGXP_009802825.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-149C3H family protein