PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470436.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 652aa    MW: 74054.5 Da    PI: 6.8566
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.66.7e-1122796501374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++l+++cA+av+++d + a +lL+++++++ p gd +qRla++f+ +L+arla+++s++ykal  ++ts    ++ l+a++l+   +P+ k+s 
  XP_016470436.1 279 LRTLMINCAQAVAADDSKSAYELLKQIRQHSYPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASCPFRKISS 370
                     57899***********************************************************999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ N++I+  +++++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g   +e++ee g+rLa++A++++vpfe+++ +ak++e+
  XP_016470436.1 371 FASNKTIMIKAKNATRVHVIDFGILYGFQWPTFIQRFAEREGGPPKLRITGIEFPQPGfrPAERIEESGRRLADYARSFNVPFEYHA-IAKKWET 464
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+++++E laV + ++ ++l+de+v  +s r+ vL l+++++P+++++   +  ++++ F++rf eal ++salfd+le+ +pre  er 
  XP_016470436.1 465 ITVDDLKLDKDEFLAVTCLYRFKNLYDETVVADSSRTVVLTLIRKINPDIFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERG 559
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Ere++gre+ nv+aceg er+er et+++W+ r+  a F+++p++ + +++a   +r  + + + ++e+s +l+lgWk+r+++++S+W+
  XP_016470436.1 560 LIEREIFGREALNVIACEGWERVERPETYKQWQVRILGARFTQIPFEREFVNKAVEKVRLGYHRDFVIDEDSRWLLLGWKGRTIYAISCWK 650
                     ************************************************************99999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.144253630IPR005202Transcription factor GRAS
PfamPF035142.3E-109279650IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MLMEEEMEDK TDMLQESLEL QAKEKSFYEA LGKKYPPSPE QNAFTNQYSE SPDDYFSGSI  60
YNSTSNTSEN SGNLVDSRGV NISTDYSSAY VESLSFRNTS VCSSNSGNTM VDGFLDSPVS  120
SFHIPDIYNE SQSIWSFRKG VEEASKFLPT NNKLLNNDLP SRESKGEAGY VVGQVGEKDE  180
VDTSPTEARG RKNPQRDDNY NEEERSSKQA AIFTESTLRS EEFDIVLLHS MGKGEEALEA  240
YRQNLRNAKS KTTVQIPKGS KGGKGRGKKQ GGKKEVIDLR TLMINCAQAV AADDSKSAYE  300
LLKQIRQHSY PFGDGNQRLA HCFADGLEAR LAGTGSQIYK ALVNKRTSAA DLLKAYHLYL  360
ASCPFRKISS FASNKTIMIK AKNATRVHVI DFGILYGFQW PTFIQRFAER EGGPPKLRIT  420
GIEFPQPGFR PAERIEESGR RLADYARSFN VPFEYHAIAK KWETITVDDL KLDKDEFLAV  480
TCLYRFKNLY DETVVADSSR TVVLTLIRKI NPDIFIHGIV NGAYSAPFFV TRFREALFHF  540
SALFDMLETI VPREIPERGL IEREIFGREA LNVIACEGWE RVERPETYKQ WQVRILGARF  600
TQIPFEREFV NKAVEKVRLG YHRDFVIDED SRWLLLGWKG RTIYAISCWK PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-482626511379Protein SCARECROW
5b3h_D3e-482626511379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470436.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1S4A1J10.0A0A1S4A1J1_TOBAC; scarecrow-like protein 9
STRINGXP_009587190.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein