PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470348.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 442aa    MW: 50058.2 Da    PI: 4.9723
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.76.5e-95504301373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                     l++lLl+cA+a++++d +laq++++ l++las++gdp+qRl++ f++AL +r +r +++  +     +++  ++ + +++++l  ++++ P+++f
  XP_016470348.1  50 LEKLLLHCANALENNDVTLAQQVMWVLNNLASSNGDPNQRLTSWFLRALISRASRVCPTATNNYLYGSSN-LDQRRLMSVTELagYVDLIPWHRF 143
                     5799***************************************************888887766554444.33455555555577********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                     ++ + N+aI++a+eg+++vHi+Df+i++++QWp+L++a+a+RpegppslRi + +   ++    + + ee+g+rLa+fA+  +vpfef+v+    
  XP_016470348.1 144 GFCVSNSAIYKAIEGHTKVHILDFSITHCMQWPTLIDAIAKRPEGPPSLRISVPSWRPPVpplLNVSSEEVGHRLANFAKFRDVPFEFQVIedln 238
                     ****************************************************988866668899999***********************96543 PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                     +   l++l++ +L+++ +Eal+Vn++  l +++de+ + +s   rd +L++vk+l+P +++vv++++d++++s+  r++ +++y +  fd+le+ 
  XP_016470348.1 239 YDMLLSQLSPLTLQLRDDEALVVNCQNWLRYMPDEQINGSSysSRDIFLDMVKELNPCIMTVVDEDSDLGNSSLTSRIATCFNYLWIPFDALETF 333
                     33356667888889999******************987776669*************************************************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                     lp++s++r  +E+  +g +i+n++  eg +r+er e  +k ++r+e++GF +vp+ e++ k++k+ll + +  g+ +++e++ lvl+Wk+++ v 
  XP_016470348.1 334 LPKDSRQRLDYEAD-IGHKIENIIGVEGVQRIERLECCNKFSQRMENSGFMSVPFCEETIKEVKSLLDERA-SGWGMKKEDDMLVLTWKGHNSVY 426
                     **************.*******************************************************9.8899******************* PP

            GRAS 370 vSaW 373
                     ++aW
  XP_016470348.1 427 ATAW 430
                     **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.84724412IPR005202Transcription factor GRAS
PfamPF035142.3E-9250430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
FVIHFITMRA ELRGNSTTIP IQNPNLFNNP QNSLAGALKG CIGSLDGACL EKLLLHCANA  60
LENNDVTLAQ QVMWVLNNLA SSNGDPNQRL TSWFLRALIS RASRVCPTAT NNYLYGSSNL  120
DQRRLMSVTE LAGYVDLIPW HRFGFCVSNS AIYKAIEGHT KVHILDFSIT HCMQWPTLID  180
AIAKRPEGPP SLRISVPSWR PPVPPLLNVS SEEVGHRLAN FAKFRDVPFE FQVIEDLNYD  240
MLLSQLSPLT LQLRDDEALV VNCQNWLRYM PDEQINGSSY SSRDIFLDMV KELNPCIMTV  300
VDEDSDLGNS SLTSRIATCF NYLWIPFDAL ETFLPKDSRQ RLDYEADIGH KIENIIGVEG  360
VQRIERLECC NKFSQRMENS GFMSVPFCEE TIKEVKSLLD ERASGWGMKK EDDMLVLTWK  420
GHNSVYATAW ILVPPQMDMT IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-552343065472Protein SHORT-ROOT
5b3h_B8e-562343011418Protein SHORT-ROOT
5b3h_E8e-562343011418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470348.10.0PREDICTED: scarecrow-like protein 32, partial
TrEMBLA0A1S4A1320.0A0A1S4A132_TOBAC; scarecrow-like protein 32
STRINGXP_009631267.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-125GRAS family protein