PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016470184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25968.9 Da PI: 5.0413 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.1 | 1.4e-15 | 46 | 97 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + + +Wv+e+r+ps+ +kr++lg++ t e+Aa+a++ +++l+g+ XP_016470184.1 46 PVYRGVRKRN-NDKWVCELREPST---QKRIWLGSYPTVEMAARAHDVVALALKGH 97 68*****888.8*********965...4************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.2E-11 | 46 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-26 | 47 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.007 | 47 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-21 | 47 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-18 | 47 | 106 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.29E-25 | 48 | 106 | No hit | No description |
PRINTS | PR00367 | 2.1E-6 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MMNNYSSSSC SSVIRAETSD EEVILLASSK PKKRAGRKKF KETRHPVYRG VRKRNNDKWV 60 CELREPSTQK RIWLGSYPTV EMAARAHDVV ALALKGHLAT LNFADSAWRL QVPVSKDPKD 120 LRQAAAKAAE AFRPGEETDV NSRGESNTGN GDEEMKAVTE ENAANNSMQN VVTAENVMYS 180 NSCGEVGMFG TQEWQTNMEE GSLFSPNPCL LGGCFSWDDD VESDVEVSLW SYSV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593083.1 | 1e-175 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Refseq | XP_016470184.1 | 1e-175 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | A0A1S4A0Q4 | 1e-174 | A0A1S4A0Q4_TOBAC; dehydration-responsive element-binding protein 1E-like | ||||
STRING | XP_009593083.1 | 1e-175 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 7e-43 | ERF family protein |