PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016469917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 548aa MW: 61258.6 Da PI: 6.5547 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.4 | 1e-25 | 190 | 243 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt +LH++Fv+av+q+ G +kA Pk+il+lm v+ Lt+e+v+SHLQkYRl XP_016469917.1 190 KPRVVWTVDLHQKFVKAVNQI-GFHKAGPKKILDLMAVPWLTRENVASHLQKYRL 243 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 79.5 | 1.1e-26 | 25 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +++++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ XP_016469917.1 25 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAQEALNLLRERKdhgFEIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 117 89*********************.***************8888889**********************6644.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ XP_016469917.1 118 GACDYLLKPIRMKELRN 134 **************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 3.4E-44 | 22 | 160 | No hit | No description |
SuperFamily | SSF52172 | 1.39E-35 | 22 | 148 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.8E-31 | 23 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.17 | 24 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-23 | 25 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.41E-30 | 26 | 140 | No hit | No description |
PROSITE profile | PS51294 | 9.084 | 187 | 246 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.74E-17 | 188 | 247 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 188 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-22 | 190 | 243 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-7 | 192 | 242 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 548 aa Download sequence Send to blast |
MMENSKSSAG FSSPRSDNFP AGLRVLVVDD DPTWLKILEK MLKKCSYEVT TCGLAQEALN 60 LLRERKDHGF EIVISDVNMP DMDGFKLLEH VGLEMDLPVI MMSVDGETSR VMKGVQHGAC 120 DYLLKPIRMK ELRNIWQHVL RKRMHEARDI GNHEMDLFDQ LWMFNGTDSG NKRKDFDDKE 180 ISVHSSSMKK PRVVWTVDLH QKFVKAVNQI GFHKAGPKKI LDLMAVPWLT RENVASHLQK 240 YRLYLTRLQK GGMKHPNVSS KENSLQNPVD VCADVTNDKC SKAIAQNCKS NIYESKVKGV 300 VSIPVAEPGS VVGDNFDSHT AGSKTSLSGL INTDVKSVDV PTPYCFTGEA PQPQYKQDFK 360 PRFPSENQPL PGIPHQIQVD CTQPTCSLNL VPSHEMREWD RLSGKENKLS SFFKSTSGVG 420 KLSALEAIQP VSHQINFHSL EQIPSTWSMT SQNVDQNLVN GLQSSTGNVT LGSGSVVASL 480 AEDMCDTSIQ GECFPAYNGL RNIQQFHYNE PQPISGVSTC LYDTLRFDYE YPNDSLEGIV 540 LDQGLFIV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-18 | 186 | 248 | 1 | 63 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 2e-82 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606770.1 | 0.0 | PREDICTED: two-component response regulator ORR26 isoform X1 | ||||
Refseq | XP_016469917.1 | 0.0 | PREDICTED: two-component response regulator ORR26-like | ||||
TrEMBL | A0A1S3ZZP4 | 0.0 | A0A1S3ZZP4_TOBAC; Two-component response regulator | ||||
STRING | XP_009606770.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6788 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-116 | response regulator 11 |