PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469910.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 329aa    MW: 36987.2 Da    PI: 9.9653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.6e-27263316355
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYe+ 
  XP_016469910.1 263 DDYSWRKYGQKPIKGSPHPRAYYKCSSVrGCPARKHVERALDEPTMLIVTYEDC 316
                     99************************988**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-15213259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-28248315IPR003657WRKY domain
PROSITE profilePS5081126.372256322IPR003657WRKY domain
SuperFamilySSF1182905.23E-23258316IPR003657WRKY domain
SMARTSM007745.3E-29261318IPR003657WRKY domain
PfamPF031062.0E-22263315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAVELMMDYR NTSRNSFTIF NTKLEEKAVV QKAASGLEGV EKLLKLLSQT QSQSQQQQKQ  60
GNLSSFLKQE NSPMEIEMVA DAAVTKFKNI ISLLGRTKTG HARFRRAPTT SPPKVKKDFM  120
DSKVYCPTPI QQVPPVAYEL YDHQFFKNPR DGVVENQELV TKKSINFSYG QDISRSNSFN  180
MSALTGETES SSFKISNLSS AGKPPLSTSS SFKRKCCSSE NDLSGKCSGS SGRCHCSKRR  240
KLRLKRVERV PAISMKMSDI PPDDYSWRKY GQKPIKGSPH PRAYYKCSSV RGCPARKHVE  300
RALDEPTMLI VTYEDCDNES KSCILSLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-17249314266WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5388765e-42AJ538876.1 Nicotiana tabacum cDNA-AFLP-fragment BT2-M23-021.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469910.10.0PREDICTED: probable WRKY transcription factor 15 isoform X2
TrEMBLA0A1S3ZZZ00.0A0A1S3ZZZ0_TOBAC; probable WRKY transcription factor 15 isoform X2
STRINGXP_009804436.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-67WRKY DNA-binding protein 7