PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016469783.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 499aa MW: 55681.3 Da PI: 6.6836

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016469783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.2e-10	196	234	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAA++sR+RKka++++Le+ L++ + XP_016469783.1 196 KTLRRLAQNREAAKKSRLRKKAYVQQLETSRIRLSQLEQ 234 7789************************86555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-7	190	238	No hit	No description
SMART	SM00338	2.4E-7	192	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.105	194	238	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.47E-22	196	248	No hit	No description
Pfam	PF00170	1.6E-7	196	234	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.64E-7	196	238	No hit	No description
PROSITE pattern	PS00036	0	199	214	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-32	277	351	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MASQGIGETG LTNSGPSNHH NMPYAVFRGL NPASTISFIY HSTPNNPEGT FDFGELEEAF 60 ALQGFKINND EAKASLYAAT TGKPAATLDM FPSWPMRFQD TLKENSKSRE EESSESGSFS 120 SRAQAHLEPE SPISRKASSE QNQLQITQQQ QQLHQEMSSD NNPRTGNLQT ELASKPNNME 180 KRKGAGSTSE RMADPKTLRR LAQNREAAKK SRLRKKAYVQ QLETSRIRLS QLEQELQRAR 240 SQGIFLGGGT AAGANISSGA ALFDMEYSRW LDDDHRHMSE LRTALQAHLS DGDLRLIVDG 300 YIAHYDEIFS LKGVAAKSDV FHLITGMWTT PAERCFLWMG GFRPSELIKM LIGQLDPLTE 360 QQLMGIYSLQ QSSQQAEDAL SQGLEQLQQS LVDTVASGSI NDGMHHMALA LGKLSNLEGF 420 VRQADNLRQQ TLHQLHRILT VRQAARCFLV IGEYYGRLRA LSSLWLSRPR ETLIADDTSC 480 QTTTELQMVH SSQNYFSNF

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MASQGIGETG LTNSGPSNHH NMPYAVFRGL NPASTISFIY HSTPNNPEGT FDFGELEEAF  60
ALQGFKINND EAKASLYAAT TGKPAATLDM FPSWPMRFQD TLKENSKSRE EESSESGSFS  120
SRAQAHLEPE SPISRKASSE QNQLQITQQQ QQLHQEMSSD NNPRTGNLQT ELASKPNNME  180
KRKGAGSTSE RMADPKTLRR LAQNREAAKK SRLRKKAYVQ QLETSRIRLS QLEQELQRAR  240
SQGIFLGGGT AAGANISSGA ALFDMEYSRW LDDDHRHMSE LRTALQAHLS DGDLRLIVDG  300
YIAHYDEIFS LKGVAAKSDV FHLITGMWTT PAERCFLWMG GFRPSELIKM LIGQLDPLTE  360
QQLMGIYSLQ QSSQQAEDAL SQGLEQLQQS LVDTVASGSI NDGMHHMALA LGKLSNLEGF  420
VRQADNLRQQ TLHQLHRILT VRQAARCFLV IGEYYGRLRA LSSLWLSRPR ETLIADDTSC  480
QTTTELQMVH SSQNYFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT693387	0.0	KT693387.1 Capsicum annuum AILZ1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016469783.1	0.0	PREDICTED: transcription factor TGA2-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3ZZH6	0.0	A0A1S3ZZH6_TOBAC; transcription factor TGA2-like
STRING	XP_009779356.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]