PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 441aa MW: 49184.8 Da PI: 5.8404 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.8e-08 | 272 | 319 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016469768.1 272 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 319 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.26E-9 | 266 | 323 | No hit | No description |
SuperFamily | SSF47459 | 1.24E-16 | 266 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.25 | 268 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-16 | 268 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-5 | 272 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 274 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MDEKNMFLNN VNTMNELNSF YNPSWENDPF ESTLSSIVSS PVTSNIMPSN SSGNNFVLRE 60 LIGKLGNICN SGEISPNSYV NSTNNSCYTT PLNSPPRLNL SNFDHQINGN LQLLGVNHMS 120 NSTNLAHFSV DSEFVNRNVP NLESGKLSRV SSSKCINVSG SQLGVQEFKE SEFGESMENS 180 SVSEQIPLGN DANSKKRKSV PKKKAKETNA KNVNVSTEIL ESSAKRSKSD EKNGSDTDVA 240 EAKEQNKDNQ KTTEPPKDYI HVRARRGQAT DAHSLAERVR REKIGERMKF LQDLVPGCNK 300 VTGKAVMLDE IINYVQSLQC QVEFLSMKLS NMNPRMDFNA ESLLSKNMFQ SAESLHHNMH 360 PSENSAAFPY EFQSQQCSNG YMARNVNIMQ LPHMEEFVEQ TPQVPTFFED DLHSVIQMGF 420 GQIQGQNLPG NISSAQMKVE L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 206 | PKKKAKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 6e-39 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469768.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
TrEMBL | A0A1S3ZZG0 | 0.0 | A0A1S3ZZG0_TOBAC; transcription factor bHLH62-like | ||||
STRING | XP_009760399.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 3e-80 | bHLH family protein |