PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469717.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 333aa    MW: 36341.5 Da    PI: 4.8492
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469717.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.82.8e-34250304155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  XP_016469717.1 250 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 304
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.956247307IPR017930Myb domain
SuperFamilySSF466893.23E-18248304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-31249306IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25250304IPR006447Myb domain, plants
PfamPF002491.7E-10252303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEARPVAVQS VVASQLSNCG ASGVLSSSSF PMLPTVLGEK YPLLPDSQQA STEKELKQHP  60
GTFVSHLPSN SGAVGLMFSS SSGFSADLHF SSVRPQENHS GPAPFISQSI NSETSILLPH  120
SGVLQSTASS QYLNENNEPW CIDPLPDFLD YSMNTPVQNS QLACSNKQSD WQEWADLVIN  180
EEDALTSNWN EIMADTSLAE TEVKMQYQEE KQPSNFPMQQ VQTSQQIPAV AVENSAIAPA  240
SSPASGAATK QRMRWTPELH EAFVEAVNKL GGSERATPKG VLKLMKVEGL TIYHVKSHLQ  300
KYRTARYKPE ASEESSEKKH SSIDDLSSLD LKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-33250308260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-180HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469716.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
RefseqXP_016469717.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
TrEMBLA0A1S3ZZ410.0A0A1S3ZZ41_TOBAC; protein PHR1-LIKE 1-like isoform X1
STRINGXP_009781296.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.45e-51G2-like family protein