PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469679.1
Common NameGRAS10
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 640aa    MW: 70320.2 Da    PI: 7.2594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.41.2e-1062736403374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + ++e+A+a+s+g ++ a ++L+rls+ ++ +g+++qRl+ay++ AL++r++     +    p+ e    +s+e++ +++ ++evsP++k+++++
  XP_016469679.1 273 QSITEAATAISEGINHVAVEILTRLSQVSNVRGSSIQRLTAYMVSALRSRVNP----TDYPPPVLEL---HSKEHTVSTQNLYEVSPCFKLGFMA 360
                     67899***********************************************9....2222333333...599999999**************** PP

            GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN aIleav  +  +++H+iDfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ +   g  ++l+++g  L+ +A+++gv + fnv +a +++dl
  XP_016469679.1 361 ANLAILEAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTELVGGVDDRLNAIGVELKAVANKIGVCLYFNV-MACKITDL 454
                     ***********9999***********************77737777*********9989**************************9.7999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L ++++EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv+vveqe++ n+++Fl+r+ ea+ yy alfdsl+a+++r++ er+ 
  XP_016469679.1 455 SREKLGLEHDEALAVNFAFKLYRLPDESVTTENLRDELLRRVKGLSPKVVTVVEQELNGNTAPFLARVNEACGYYGALFDSLDATVSRDKLERVR 549
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+  l+r+  n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a++  + l+     + g++v+e+sg +++gW++r+L+++SaWr
  XP_016469679.1 550 IEEG-LSRKMANSVACEGRDRVERCEVFGKWRARMSMAGFVQRPMSQLVANSLCSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAWR 640
                     ****.******************************************9999887777654437999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.56245618IPR005202Transcription factor GRAS
PfamPF035144.0E-104273640IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MSSGFPGDFY GAGGINTGRS TMNNNTLRSQ LSGILPDPAT QIVLGRPNLM GKRSLAEFQQ  60
QQQFQFLQQQ QQQNQQQQMI LQQQQQQQGL GFYLRNVKPR NYQQASPIDF SAVASSISSE  120
FSSFSSNSNA STMNTRHTLP VLQQLRSQPA LPSANTNISG FLHPGTQNYS TGVHSRATIG  180
QELLSQESEK KMMNQLQELE KQLLDDVDDE DGDTVSVVTN NEWSETIQNL ISPCQSQNQN  240
QNQNQKLASL SPSSSTSSCA SSTESPPISC PKQSITEAAT AISEGINHVA VEILTRLSQV  300
SNVRGSSIQR LTAYMVSALR SRVNPTDYPP PVLELHSKEH TVSTQNLYEV SPCFKLGFMA  360
ANLAILEAVT DHPTNKIHVI DFDVGQGGQY LHLLHALAAK KSEKPAVLKI TAFTELVGGV  420
DDRLNAIGVE LKAVANKIGV CLYFNVMACK ITDLSREKLG LEHDEALAVN FAFKLYRLPD  480
ESVTTENLRD ELLRRVKGLS PKVVTVVEQE LNGNTAPFLA RVNEACGYYG ALFDSLDATV  540
SRDKLERVRI EEGLSRKMAN SVACEGRDRV ERCEVFGKWR ARMSMAGFVQ RPMSQLVANS  600
LCSKLNSGTR GNPGFTVNEQ SGGICFGWMG RTLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-412686409375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7302480.0KJ730248.1 Nicotiana tabacum GRAS10 protein (GRAS10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469679.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR71e-156SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1S3ZZA20.0A0A1S3ZZA2_TOBAC; scarecrow-like protein 8 isoform X2
STRINGXP_009787242.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-140SCARECROW-like 8