PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469678.1 | ||||||||
Common Name | GRAS10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 640aa MW: 70306.2 Da PI: 7.0605 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 349.2 | 6.6e-107 | 273 | 640 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + ++e+A+a+s+g ++ a ++L+rls+ ++ +g+++qRl+ay++ AL++r++ + p+ e +s+e++ +++ ++evsP++k+++++ XP_016469678.1 273 QSITEAATAISEGINHVAVEILTRLSQVSNVRGSSIQRLTAYMVSALRSRVNP----TDYPPPVLEL---HSKEHTVSTQNLYEVSPCFKLGFMA 360 67899***********************************************9....2222333333...599999999**************** PP GRAS 98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN aIleav + +++H+iDfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ + g ++l+++g L+ +A+++gv + fnv +a +++dl XP_016469678.1 361 ANLAILEAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTELVGGVDDRLNAIGVELKAVANKIGVCLYFNV-MACKITDL 454 ***********9999***********************77737777*********9989**************************9.7999**** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 + e+L ++++EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv+vveqe++ n+++Fl+r+ ea+ yy alfdsl+a+++r++ er+ XP_016469678.1 455 SREKLGLEHDEALAVNFAFKLYRLPDESVTTENLRDELLRRVKGLSPKVVTVVEQELNGNTAPFLARVNEACGYYGALFDSLDATVSRDNLERVR 549 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ l+r+ n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a++ + l+ + g++v+e+sg +++gW++r+L+++SaWr XP_016469678.1 550 IEEG-LSRKMANSVACEGRDRVERCEVFGKWRARMSMAGFVQRPMSQLVANSLCSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAWR 640 ****.******************************************9999887777654437999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.571 | 245 | 618 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-104 | 273 | 640 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MSSGFPGDFY GAGGINTGRS TMNNNTLRSQ LSGILPDPAT QIVLGRPNLM GKRSLAEFQQ 60 QQQFQFLQQQ QQQNQQQQMI LQQQQQQQGL GFYLRNVKPR NYQQASPIDF SAVASSISSE 120 FSSFSSNSNA STMNTRHTLP VLQQLRSQPA LPSANTNISG FLHPGTQNYS TGVHSRATIG 180 QELLSQESEK KMMNQLQELE KQLLDDVDDE DGDTVSVVTN NEWSETIQNL ISPCQSQNQN 240 QNQNQKLASL SPSSSTSSCA SSTESPPISC PKQSITEAAT AISEGINHVA VEILTRLSQV 300 SNVRGSSIQR LTAYMVSALR SRVNPTDYPP PVLELHSKEH TVSTQNLYEV SPCFKLGFMA 360 ANLAILEAVT DHPTNKIHVI DFDVGQGGQY LHLLHALAAK KSEKPAVLKI TAFTELVGGV 420 DDRLNAIGVE LKAVANKIGV CLYFNVMACK ITDLSREKLG LEHDEALAVN FAFKLYRLPD 480 ESVTTENLRD ELLRRVKGLS PKVVTVVEQE LNGNTAPFLA RVNEACGYYG ALFDSLDATV 540 SRDNLERVRI EEGLSRKMAN SVACEGRDRV ERCEVFGKWR ARMSMAGFVQ RPMSQLVANS 600 LCSKLNSGTR GNPGFTVNEQ SGGICFGWMG RTLTVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-41 | 268 | 640 | 9 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ730248 | 0.0 | KJ730248.1 Nicotiana tabacum GRAS10 protein (GRAS10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469678.1 | 0.0 | PREDICTED: scarecrow-like protein 8 isoform X1 | ||||
Swissprot | Q9FYR7 | 1e-157 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A1S3ZZ70 | 0.0 | A0A1S3ZZ70_TOBAC; scarecrow-like protein 8 isoform X1 | ||||
STRING | XP_009787242.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-141 | SCARECROW-like 8 |