PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 317aa MW: 34631.9 Da PI: 8.3617 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6.1e-40 | 40 | 101 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss XP_016469483.1 40 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNIPVGGGSRKNKKSSS 101 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-26 | 28 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.8E-34 | 41 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.161 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MDTAQWPQEI VVKPMEEIIQ NTNGSSKPNS CVERKVRPQK DQALNCPRCN STNTKFCYYN 60 NYSLSQPRYF CKTCRRYWTA GGSLRNIPVG GGSRKNKKSS SNSSSYSNHV NHVNNPLKKL 120 PDLVNQPSHN HDQNPSKIHI EGSQDLNLGF SSDFKTITEL IQVPNYDGSN KDNNSPSISP 180 LPPPPPSSSS SASSSSQLSA LELINGITSR GMNNNSFMSM ANISTDPNSV YNNSSGFSLP 240 SLNFSLDHGL GNAAYGNNLQ ETNTSGRFLF PFVGLKQIST TNTTNDGGNE NNRDHHQPAE 300 ESTNGFWNGM LGGGGSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 4e-73 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 4e-73 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766033.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Refseq | XP_016469483.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A1S3ZYQ1 | 0.0 | A0A1S3ZYQ1_TOBAC; dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A1U7VI71 | 0.0 | A0A1U7VI71_NICSY; dof zinc finger protein DOF4.6-like | ||||
STRING | XP_009766033.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64620.1 | 2e-45 | Dof family protein |