PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469427.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 674aa    MW: 74849.1 Da    PI: 5.7702
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.65.4e-1282916581373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++cAea+ s++ + +++l+arl +lasp+g +p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsPi+kf 
  XP_016469427.1 291 LISLLVSCAEAIGSRNVTGVNQLIARLGDLASPRGgSPIIRLTAYFTEALALRVARLWPHIFHIIPPRNLD-RLDDDSSTALRLLNQVSPIPKFI 384
                     5799******************************999********************************98.5678888999************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t N+ +l+a+eg+ervHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef++ v++rled+
  XP_016469427.1 385 HFTSNEILLRAFEGKERVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEFHP-VVDRLEDV 474
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gE++aVn++lq+hrll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+fds+  +lp +s  rik
  XP_016469427.1 475 RLWMLHVKEGESVAVNCALQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAVFDSIGFSLPLDSPSRIK 567
                     ************************966655444..79********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                     +E+  ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+   ++e++  q ++ll++++ + +rv    +++++l+l W d+pL +vSaW
  XP_016469427.1 568 IEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELLQSQMLLKMYSCEDFRVIkqgNDDAALTLSWLDQPLCTVSAW 658
                     **98.********************************************************88899984445589999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.25265636IPR005202Transcription factor GRAS
PfamPF035141.9E-125291658IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MLAGCSSTLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDNQR SQSIRPVGSL  60
SVDKPIETKN SSCSLKQNIR LPPSPTTAQT SSYVEGESKD EYWEKGRSLK RYADQGCFDD  120
ENCINRGAKR KKGNRKSVDC SEEVEGYGLS LGQLGSGNFW LQSGYNVSRS VQAAAPFSFS  180
CSGEEESVCF VPSEVISPPP PLSNNPWIDS VVTEITNFGD KNVSTSQDPA KEASVSSASL  240
DSHGLVLRLN ENPGEHEIGN GSRPPNPNDR SEVVAAHNEH NNHREDDAAE LISLLVSCAE  300
AIGSRNVTGV NQLIARLGDL ASPRGGSPII RLTAYFTEAL ALRVARLWPH IFHIIPPRNL  360
DRLDDDSSTA LRLLNQVSPI PKFIHFTSNE ILLRAFEGKE RVHIIDFDIK QGLQWPSLFQ  420
SLASRPNPPT HVRITGIGES KQDLVETGDR LAEFAEALNL AFEFHPVVDR LEDVRLWMLH  480
VKEGESVAVN CALQMHRLLY DSSGGILRDF LGLIRSTNPT IILMAEQEAE HNEPSLEARL  540
VNSLRYYAAV FDSIGFSLPL DSPSRIKIEE LFARDIRNII ACEGRDRTER HECFGKWRKL  600
MEQGGFRCTG ITERELLQSQ MLLKMYSCED FRVIKQGNDD AALTLSWLDQ PLCTVSAWSP  660
LDAAGSSSSY YQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-7129866026380Protein SCARECROW
5b3h_A4e-7129866025379Protein SCARECROW
5b3h_D4e-7129866025379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092790.0AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence.
GenBankAP0102630.0AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469427.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A1S3ZYD30.0A0A1S3ZYD3_TOBAC; scarecrow-like protein 28
STRINGXP_009609251.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein