PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469246.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 246aa    MW: 27264 Da    PI: 9.0229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20102152255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  XP_016469246.1 102 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDKAAYRMRG 152
                     7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-32101161IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-23102162IPR016177DNA-binding domain
SMARTSM003806.6E-37102166IPR001471AP2/ERF domain
CDDcd000185.22E-31102161No hitNo description
PROSITE profilePS5103224.368102160IPR001471AP2/ERF domain
PfamPF008471.7E-14102152IPR001471AP2/ERF domain
PRINTSPR003675.4E-11103114IPR001471AP2/ERF domain
PRINTSPR003675.4E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MYQPISTEFP VYHRTSSFSS LMPCLTDTWG DLPLKVDDSE DMVIYGLLSD ALTTGWTPFN  60
LTSTEIKAEP REEIEPATSP VPSVAPPAET TTAQAVVPKG RHYRGVRQRP WGKFAAEIRD  120
PAKNGARVWL GTYETAEEAA LAYDKAAYRM RGSKALLNFP HRIGLNEPEP VRLTVKRRSP  180
EPAVKRRSPE PASSSISPAS ENSLPKRRRK AVAAKQAELE VQSRSNVMQV GCQMEQFPVG  240
EQLLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3799167270ATERF1
3gcc_A1e-3799167270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0162640.0AB016264.1 Nicotiana sylvestris nserf2 gene for ethylene-responsive element binding factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469246.10.0PREDICTED: ethylene-responsive transcription factor 2
SwissprotQ9LW501e-165ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A1S3ZY770.0A0A1S3ZY77_TOBAC; ethylene-responsive transcription factor 2
STRINGXP_009765938.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.16e-51ethylene responsive element binding factor 1