PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469228.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 246aa    MW: 28069 Da    PI: 4.5986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-1145851055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r RR+++ +++  Lrel+P +      K++ a+iL  A++YI+ Lq
  XP_016469228.1 45 RWRREQVDKRIKALRELIPGC-----DKVDQASILDDAIKYIQALQ 85
                    99******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.09E-113387No hitNo description
PROSITE profilePS5088814.5963584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-104190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1243105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-1445110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-84585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEFNKENDIE KQQESQDEGR EDELKMNYFH SLHNVRESNS RNTTRWRREQ VDKRIKALRE  60
LIPGCDKVDQ ASILDDAIKY IQALQQLHRI TSMRMGLMSQ EADMSQAGMM LMPQMEPTNG  120
IMANQTVIPP FALPTSSSLS GLQMVPQFQA PFCPQFLQST AYIMPLSPSF FTAPSPTMTQ  180
GRTIRDSSAS NPGVDLLREY EEAIDYNNSN QGLFFSFPML QINYDIIILT LPFSASMNIV  240
FLVTFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758958.10.0PREDICTED: transcription factor PIF1-like isoform X2
RefseqXP_016469228.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A1S3ZY040.0A0A1S3ZY04_TOBAC; transcription factor PIF1-like isoform X1
TrEMBLA0A1U7UXR20.0A0A1U7UXR2_NICSY; transcription factor PIF1-like isoform X2
STRINGXP_009758957.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1991533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-13phytochrome interacting factor 3