PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016469183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 34755.4 Da PI: 7.7529 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.3e-17 | 65 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G+++W++I+ ++ +R++k+c++rw + XP_016469183.1 65 KGSWSPEEDAMLTKLVDQHGPRNWSLISIGIP-RRSGKSCRLRWCNQ 110 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 119 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a+ +G++ W+tIar ++ gRt++ +k++w++ XP_016469183.1 119 PFTPSEDAIILQAHSVHGNR-WATIARLLP-GRTDNAIKNHWNST 161 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.635 | 60 | 111 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-30 | 63 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-15 | 64 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 65 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 66 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.02E-14 | 67 | 109 | No hit | No description |
PROSITE profile | PS51294 | 25.288 | 112 | 166 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 116 | 164 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 119 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-14 | 119 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-12 | 119 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MRAVYVSCQQ LLFPYGYCYA DHVTFTCSSS SSLPSFLFLN PNHLLPFILQ QIIYSMDNST 60 GEKIKGSWSP EEDAMLTKLV DQHGPRNWSL ISIGIPRRSG KSCRLRWCNQ LSPAVQHRPF 120 TPSEDAIILQ AHSVHGNRWA TIARLLPGRT DNAIKNHWNS TLRRKRHAPE AAAAAAATML 180 MGLDESRTGS SSESNSKRQC SRASQEQSSY GLDADDLGRN GPETSLTLSL PGGGLQQSHA 240 VDEKIVKDEV PPPINGDNKV KEEKCRVEIE ETCLVTIMQR MIAHEVRCYI DKLRAQGGLE 300 IVPGFESDVP KQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-37 | 62 | 165 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469183.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1S3ZXV8 | 0.0 | A0A1S3ZXV8_TOBAC; transcription factor MYB44-like | ||||
STRING | XP_009600873.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12883 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-51 | myb domain protein 73 |