PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468971.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 378aa MW: 43121.4 Da PI: 7.9368

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.6e-53	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yL++k+++k+l++ e ik++diyk++PwdLpk ++ +e+ewyfF++rd+ky++++r+nr+t +g+Wkatg+d++++s+ XP_016468971.1 17 MLPGFRFHPTDEELVGFYLRRKIQHKTLSI-ELIKQLDIYKFDPWDLPKLATIGEREWYFFCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSS 110 579*************************.89***********8888899***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_016468971.1 111 eGSKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRL 144 56677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-58	15	175	IPR003441	NAC domain
PROSITE profile	PS51005	57.694	17	175	IPR003441	NAC domain
Pfam	PF02365	1.5E-26	19	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MMEEKRNESE GKIDEMMLPG FRFHPTDEEL VGFYLRRKIQ HKTLSIELIK QLDIYKFDPW 60 DLPKLATIGE REWYFFCPRD RKYRNSTRPN RVTGAGFWKA TGTDRPIYSS EGSKCIGLKK 120 SLVFYKGRAA KGTKTDWMMH EFRLPSITDS TTPKRFLDKN IPPNDSWAIC RIFKKANSNT 180 HRALSHSWVS PQISSNTTPY FQTSNHFTPN EMSFIAKSAS SAIQFSNDLQ NSSMASFSPI 240 DLPPYRTINP ITTSHRHPQQ ISISNHDSTT SYTLSNSCTN LNIDASSLLL NMSSSILGDY 300 NNFSITLPEN IEENQIQEAG NLVKELPNVN VDHMQEQWGN VRSVIGFPVN ADIDAWKSNL 360 LWDSSPCPSE MSTSYSTN

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MMEEKRNESE GKIDEMMLPG FRFHPTDEEL VGFYLRRKIQ HKTLSIELIK QLDIYKFDPW  60
DLPKLATIGE REWYFFCPRD RKYRNSTRPN RVTGAGFWKA TGTDRPIYSS EGSKCIGLKK  120
SLVFYKGRAA KGTKTDWMMH EFRLPSITDS TTPKRFLDKN IPPNDSWAIC RIFKKANSNT  180
HRALSHSWVS PQISSNTTPY FQTSNHFTPN EMSFIAKSAS SAIQFSNDLQ NSSMASFSPI  240
DLPPYRTINP ITTSHRHPQQ ISISNHDSTT SYTLSNSCTN LNIDASSLLL NMSSSILGDY  300
NNFSITLPEN IEENQIQEAG NLVKELPNVN VDHMQEQWGN VRSVIGFPVN ADIDAWKSNL  360
LWDSSPCPSE MSTSYSTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	19	178	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	19	178	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	19	178	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	19	178	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	19	178	22	171	NAC domain-containing protein 19
3swm_B	1e-56	19	178	22	171	NAC domain-containing protein 19
3swm_C	1e-56	19	178	22	171	NAC domain-containing protein 19
3swm_D	1e-56	19	178	22	171	NAC domain-containing protein 19
3swp_A	1e-56	19	178	22	171	NAC domain-containing protein 19
3swp_B	1e-56	19	178	22	171	NAC domain-containing protein 19
3swp_C	1e-56	19	178	22	171	NAC domain-containing protein 19
3swp_D	1e-56	19	178	22	171	NAC domain-containing protein 19
4dul_A	1e-56	19	178	19	168	NAC domain-containing protein 19
4dul_B	1e-56	19	178	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468971.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-107	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3ZXF5	0.0	A0A1S3ZXF5_TOBAC; protein FEZ-like
STRING	XP_009590031.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-108	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]