PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016468873.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21852.8 Da PI: 5.3321 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.2e-18 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p gk+ r++lg+f t+e+Aa+a++ a+++++g XP_016468873.1 16 TVYRGVRMRN-WGKWVSEIREP---GKKSRIWLGTFPTPEMAARAHDVAALAIKG 66 57*****998.**********8...557**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.3E-13 | 16 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.827 | 17 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 17 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-36 | 17 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 17 | 75 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.03E-32 | 18 | 76 | No hit | No description |
PRINTS | PR00367 | 1.8E-10 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEEKKIKRTR ESNKHTVYRG VRMRNWGKWV SEIREPGKKS RIWLGTFPTP EMAARAHDVA 60 ALAIKGDGAT LNFPELANSL PRPVSLNARD IQAAATTAAS MQISDSYAPS CSLSSSLSTS 120 SSLLPTNSTM TDLGTTIDEL TQIIELPRLE TIFDDSFYLK NDFMCADYPS PWLNCEDELR 180 VISSYFEPYL LWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 14 | 78 | 11 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016468873.1 | 1e-143 | PREDICTED: dehydration-responsive element-binding protein 3-like, partial | ||||
Swissprot | Q9LYD3 | 2e-59 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A1S3ZX01 | 1e-142 | A0A1S3ZX01_TOBAC; dehydration-responsive element-binding protein 3-like | ||||
STRING | XP_009801170.1 | 1e-120 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-56 | ERF family protein |
Publications ? help Back to Top | |||
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