PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468849.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 285aa MW: 32186.6 Da PI: 7.99

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.6e-40	38	97	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+a+kcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ s XP_016468849.1 38 EQAQKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRIS 97 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	35	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.283	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDPSNAHHHH QEMSSQTLES MLVCTKQDQE KKPRPGAEQA QKCPRCDSTN TKFCYYNNYS 60 LTQPRYFCKS CRRYWTKGGT LRNVPVGGGC RKNKRISSKR SQDQSLTNSP NNPISSITPT 120 SYDSSSDLSL AFARLQKQAN GNLGIEENDN MSMMYNNHGN NIASTSFLDT LRGGFLETPN 180 GFQYQNLYYE NNMGQVQNGG MGMNNANEEM RMNYDQEMSG GKIVKQEMCN IAREGENNRI 240 LWGFPWQING EVNNMADFEA SNRGQNWNTG FGGSSWHGLL NSPLM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758434.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like isoform X1
Refseq	XP_016468849.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	A0A1S3ZWX1	0.0	A0A1S3ZWX1_TOBAC; dof zinc finger protein DOF2.1-like
TrEMBL	A0A1U7V848	0.0	A0A1U7V848_NICSY; dof zinc finger protein DOF2.1-like isoform X1
STRING	XP_009758434.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-40	TARGET OF MONOPTEROS 6