PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468780.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 698aa MW: 78743 Da PI: 6.0746

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.6	2.6e-107	321	694	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cAeav+s + + ++L+++++++sp gdp+ Rla +f++AL+ar a+ + +++++ ++s + ++ l+a++++ ++P+ ++s++ XP_016468780.1 321 TSLLTRCAEAVASYNSKTFVEVLSKIRQHSSPLGDPTARLAYCFANALEARFAG---GGGDTITTPKKSILSAADFLKAFQVYITACPFKRMSNI 412 689*************************************************...4444455555555569****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN+ I + ++++ ++HiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g +e++eetg+rL+++++++gvpfe+++ +ak+++d+ XP_016468780.1 413 FANKSIAKLTNEAPKIHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLENYCKRFGVPFEYKA-IAKKWDDI 506 ****************************************************9*************************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +le+L ++++E+++Vn+ ++l++++de+v ++ +r++vLkl+k+++P+ +v+ +a +n++ F +rf eal ++s+ fd++ea++ re+e XP_016468780.1 507 KLEDLIIEQDETVVVNCLYRLKNVPDETVLSHGsnsPRNAVLKLIKEINPHWFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMTREDEG 601 **********************98755433459****************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ E+e++gr+i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +r+++ + + v+e+s+++++gWk+r ++++S+W+ XP_016468780.1 602 RMIFEQEVFGRDIRNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLNQDIVKEVKAKVRMFYHRDFLVDEDSNWMLQGWKGRIMYALSVWQ 694 ************************************************************999***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.085	294	674	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.9E-105	321	694	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MNTNTYFPSV DHRSSDGLEL CHRFAMTSTN LGNEFSSADH HDVVFFSSSC GTSSNNDNVV 60 VEGGGGCDQT VVESDYFDGV FKYIQQMLLE EDDDLESRPC MFQDCVALQA AEKSFYDALT 120 DNNNNDPTIV EHCSSTDFPV NHAFISTTHC LLDDNFNHFL DQPNLISDFN ASNTGIRGNT 180 PLNNNCQAAA AANGDHRNIY YGVNSPNTNN QGGTSKSEGK KKHNREECGE SSNGPNSKQF 240 ASNGTEETEE QTHEEYYDKA LLCPDMNPAF YVEDSCDDGS RSSSENVAWD KQKSRHIKQS 300 KRGRPRGSKK GVKTNEVVDL TSLLTRCAEA VASYNSKTFV EVLSKIRQHS SPLGDPTARL 360 AYCFANALEA RFAGGGGDTI TTPKKSILSA ADFLKAFQVY ITACPFKRMS NIFANKSIAK 420 LTNEAPKIHI IDFGILYGFQ WPCIIHGISL RPGGPPKLKI TGIDFPQPGF RPAERVEETG 480 RRLENYCKRF GVPFEYKAIA KKWDDIKLED LIIEQDETVV VNCLYRLKNV PDETVLSHGS 540 NSPRNAVLKL IKEINPHWFV HGIVNAMYNA SFFTTRFREA LFHFSSQFDM FEATMTREDE 600 GRMIFEQEVF GRDIRNVIAC EGTERVERPE SYKQWSVRNQ IAGFRQLPLN QDIVKEVKAK 660 VRMFYHRDFL VDEDSNWMLQ GWKGRIMYAL SVWQPIHK

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MNTNTYFPSV DHRSSDGLEL CHRFAMTSTN LGNEFSSADH HDVVFFSSSC GTSSNNDNVV  60
VEGGGGCDQT VVESDYFDGV FKYIQQMLLE EDDDLESRPC MFQDCVALQA AEKSFYDALT  120
DNNNNDPTIV EHCSSTDFPV NHAFISTTHC LLDDNFNHFL DQPNLISDFN ASNTGIRGNT  180
PLNNNCQAAA AANGDHRNIY YGVNSPNTNN QGGTSKSEGK KKHNREECGE SSNGPNSKQF  240
ASNGTEETEE QTHEEYYDKA LLCPDMNPAF YVEDSCDDGS RSSSENVAWD KQKSRHIKQS  300
KRGRPRGSKK GVKTNEVVDL TSLLTRCAEA VASYNSKTFV EVLSKIRQHS SPLGDPTARL  360
AYCFANALEA RFAGGGGDTI TTPKKSILSA ADFLKAFQVY ITACPFKRMS NIFANKSIAK  420
LTNEAPKIHI IDFGILYGFQ WPCIIHGISL RPGGPPKLKI TGIDFPQPGF RPAERVEETG  480
RRLENYCKRF GVPFEYKAIA KKWDDIKLED LIIEQDETVV VNCLYRLKNV PDETVLSHGS  540
NSPRNAVLKL IKEINPHWFV HGIVNAMYNA SFFTTRFREA LFHFSSQFDM FEATMTREDE  600
GRMIFEQEVF GRDIRNVIAC EGTERVERPE SYKQWSVRNQ IAGFRQLPLN QDIVKEVKAK  660
VRMFYHRDFL VDEDSNWMLQ GWKGRIMYAL SVWQPIHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-49	320	694	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468780.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A1S3ZWH1	0.0	A0A1S3ZWH1_TOBAC; scarecrow-like protein 30
STRING	XP_009607088.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-156	SCARECROW-like 14