PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016468742.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 21756.5 Da PI: 9.172 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.5e-18 | 26 | 66 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd +l++a+++ G++ W+ Ia+++ gRt++++k++w+ XP_016468742.1 26 LWTEEEDRILIEAHAEVGNK-WAEIAKRLR-GRTENSIKNHWN 66 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.06E-24 | 1 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.066 | 1 | 18 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 2 | 19 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.573 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 20 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 26 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-12 | 27 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MLKGRIGKQS RERWHNHLRP DIKKDLWTEE EDRILIEAHA EVGNKWAEIA KRLRGRTENS 60 IKNHWNATKR RQFSRRKCRT KWPKPSSLLQ NYIKSLNLEK GNSKKKSQTS NATNSTAKVE 120 TIEFCQGNIE QVREYCDFSE VPEFALDDIF FEENRMNSFM EDIYSCWSTF HYGEMHGFGD 180 YSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-31 | 2 | 73 | 34 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-31 | 2 | 73 | 34 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016468742.1 | 1e-136 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 1e-51 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A1S3ZWI3 | 1e-135 | A0A1S3ZWI3_TOBAC; transcription factor MYB98-like | ||||
STRING | XP_009603629.1 | 4e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-54 | myb domain protein 98 |
Publications ? help Back to Top | |||
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