PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468720.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 26834.3 Da PI: 4.8875

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.8	1.7e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+eyss XP_016468720.1 9 KKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSS 59 68***********************************************96 PP
2	K-box	52.7	1.8e-18	91	173	18	100
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++kL kei++ + +R++ Ge+L+ Ls++eLqqLe+ Le +l+++ ++K + ++++i++lq+k +l een+ L+++++e XP_016468720.1 91 NSNYSKLSKEISEKSHRLRQMRGEELQGLSIEELQQLERSLEAGLTRVIERKGDKIMREINQLQQKGMQLMEENEILKQQVME 173 56899***************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.8E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.628	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.44E-40	2	77	No hit	No description
SuperFamily	SSF55455	3.4E-31	3	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.9E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.9E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.9E-28	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	13.922	87	177	IPR002487	Transcription factor, K-box
Pfam	PF01486	6.8E-17	92	171	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAREKIQIKK IDNSTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS 60 GMKEILERRD LHSKNLEKLD QPSLELQLVE NSNYSKLSKE ISEKSHRLRQ MRGEELQGLS 120 IEELQQLERS LEAGLTRVIE RKGDKIMREI NQLQQKGMQL MEENEILKQQ VMEISNNGYQ 180 NPAAAAELLI AVESENGFIN EEGQLSESVT NACNSTGPPP QDDDSSDTSL KLGLPYSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	5e-21	1	66	1	66	MEF2C
5f28_B	5e-21	1	66	1	66	MEF2C
5f28_C	5e-21	1	66	1	66	MEF2C
5f28_D	5e-21	1	66	1	66	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU129907	0.0	GU129907.1 Petunia x hybrida MADS-box protein 20 (PMADS20) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468720.1	1e-172	PREDICTED: MADS-box protein JOINTLESS-like
Swissprot	Q9FUY6	1e-135	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A1S3ZWC1	1e-171	A0A1S3ZWC1_TOBAC; MADS-box protein JOINTLESS-like
STRING	XP_009623750.1	1e-171	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA938	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-110	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]