PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468599.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 313aa    MW: 33657.2 Da    PI: 9.2791
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.13.5e-3770129362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+ lkcprCds+ntk+Cy+nny+l+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  XP_016468599.1  70 EAGLKCPRCDSSNTKLCYFNNYNLAQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRSK 129
                     6779*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3553122IPR003851Zinc finger, Dof-type
PfamPF027015.7E-3172127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.82673127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSFSSFPVYL DHPNLQQLQQ LDHNQQGNPG LENSQLPTAV PPAHVGGSPG SIRPGSMVDR  60
ARLAKIPLPE AGLKCPRCDS SNTKLCYFNN YNLAQPRHFC KSCRRYWTRG GALRSVPVGG  120
GCRRNKRSKS TNNSSKTAGG NNTAERQIGT TSTSTSASPS SCSKEITGQH FSQSSTHLTP  180
LMAAFQNLNH QYGGFQPPPL VSTQNNGGLG HEMGFQIGNS TNNLQAATGG SDHHQWRLPS  240
LAATNLYPFQ GEGIEATPSG ISHQDSVVRM EENNQGLNST KQFLGTMENN QYWGGNAWTG  300
FSGLNSSSAG HLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5389771e-70AJ538977.1 Nicotiana tabacum cDNA-AFLP-fragment BT31-M2-065.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468585.10.0PREDICTED: dof zinc finger protein DOF2.4-like
RefseqXP_016468592.10.0PREDICTED: dof zinc finger protein DOF2.4-like
RefseqXP_016468599.10.0PREDICTED: dof zinc finger protein DOF2.4-like
RefseqXP_016468608.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A1S3ZW510.0A0A1S3ZW51_TOBAC; dof zinc finger protein DOF2.4-like
STRINGXP_009774236.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-41Dof family protein