PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016468599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 313aa MW: 33657.2 Da PI: 9.2791 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.1 | 3.5e-37 | 70 | 129 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprCds+ntk+Cy+nny+l+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ XP_016468599.1 70 EAGLKCPRCDSSNTKLCYFNNYNLAQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRSK 129 6779*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-35 | 53 | 122 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-31 | 72 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.826 | 73 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 75 | 111 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSFSSFPVYL DHPNLQQLQQ LDHNQQGNPG LENSQLPTAV PPAHVGGSPG SIRPGSMVDR 60 ARLAKIPLPE AGLKCPRCDS SNTKLCYFNN YNLAQPRHFC KSCRRYWTRG GALRSVPVGG 120 GCRRNKRSKS TNNSSKTAGG NNTAERQIGT TSTSTSASPS SCSKEITGQH FSQSSTHLTP 180 LMAAFQNLNH QYGGFQPPPL VSTQNNGGLG HEMGFQIGNS TNNLQAATGG SDHHQWRLPS 240 LAATNLYPFQ GEGIEATPSG ISHQDSVVRM EENNQGLNST KQFLGTMENN QYWGGNAWTG 300 FSGLNSSSAG HLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538977 | 1e-70 | AJ538977.1 Nicotiana tabacum cDNA-AFLP-fragment BT31-M2-065. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016468585.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Refseq | XP_016468592.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Refseq | XP_016468599.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Refseq | XP_016468608.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A1S3ZW51 | 0.0 | A0A1S3ZW51_TOBAC; dof zinc finger protein DOF2.4-like | ||||
STRING | XP_009774236.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 2e-41 | Dof family protein |