PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016468582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 224aa MW: 24877.2 Da PI: 9.2836 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 69 | 123 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_016468582.1 69 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 123 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.7 | 2.4e-41 | 69 | 159 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk XP_016468582.1 69 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLQKELQELR-ALK 159 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-19 | 58 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 65 | 125 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-16 | 67 | 129 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.5E-16 | 69 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.93E-14 | 69 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 69 | 123 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 100 | 123 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.3E-10 | 125 | 159 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.1E-25 | 125 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MNRRQLVAEE AEEGAALSSP NSAISTFQVN IPIYRNGNML LGKRESEGDV ERWGNSSSRA 60 SDEEDGSARK KLRLTKEQSA FLEESFKEHN TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA 120 RTKLKQTEVD CEYLKKCCET LTEENKRLQK ELQELRALKS SQPFYMQLPA TTLTMCPSCE 180 RVVTATSSAA AASAAAAANT TLTLAKPGPF PFSPAQVQAP QAAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 125 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016468581.1 | 1e-163 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Refseq | XP_016468582.1 | 1e-163 | PREDICTED: homeobox-leucine zipper protein HAT14-like | ||||
Swissprot | P46665 | 4e-84 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1S3ZW40 | 1e-162 | A0A1S3ZW40_TOBAC; homeobox-leucine zipper protein HAT14-like | ||||
STRING | XP_009604043.1 | 1e-135 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 6e-68 | homeobox from Arabidopsis thaliana |