PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468311.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 540aa    MW: 61817.4 Da    PI: 6.3952
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK56.84.4e-18365413351
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                     ++++ +dl+++F++++ dAA +L+v+ ++LKr CR+yGI+RWP+ k k+
  XP_016468311.1 365 DSVNYDDLKQHFNKNLSDAAESLQVSRSTLKRLCRKYGIRRWPSSKRKK 413
                     678899*************************************988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.118351437IPR003035RWP-RK domain
PfamPF020424.7E-18367413IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.601.4E-5376403IPR009057Homeodomain-like
SuperFamilySSF542773.36E-18441531No hitNo description
Gene3DG3DSA:3.10.20.2402.0E-18447531No hitNo description
SMARTSM006662.9E-13450532IPR000270PB1 domain
PROSITE profilePS5174519.598450532IPR000270PB1 domain
PfamPF005641.9E-14451530IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MRDHAVRCGV RTYLALPVFE PIGKNCVGVI ELVTVWKGGY LTYEVEKVLN ALEGVDLKCP  60
KLYLQKARKV QAGKQSERGE IKRMLKIVRE THKLPFVRVW IPCKNLEMDH NGMYRGCTEH  120
VISASNEVYY VADEEMDAND HVYDDYYYDD MLCFRDISKL QPLQKDQGVV GKAFFSDELC  180
YCENITEFSI IEYPLVHYAR WCGLTSSFAI CLKNGDEAYI LELFLPPDNG DPTILLGSIL  240
STMGQHFQNF KFASGQELGH DSSVQVIKVS SDKNVDYFHI CQTRESPFMP EVCDEERRNW  300
LMEGNENHIE KEAISECTVQ NSVDNGQQQI MVQSDVLNTD IQVISEKQCV SVTHLQKESR  360
TRTKDSVNYD DLKQHFNKNL SDAAESLQVS RSTLKRLCRK YGIRRWPSSK RKKTVNESDC  420
QPLNMLPKKK KAITSAATST HANHVNSSSS ITVKATYGED MMKFKLYSSS RKDDLDRELA  480
KRLQLPIGKF RIKYMDEDND YIWIACDDDL SDCFNNAQSL GNNTIKMLVL PAAITYSLEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410430RKKTVNESDCQPLNMLPKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468310.10.0PREDICTED: protein NLP6-like isoform X1
TrEMBLA0A1S3ZV600.0A0A1S3ZV60_TOBAC; protein NLP6-like isoform X1
STRINGXP_009605048.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.15e-65NIN like protein 7