PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468310.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 713aa    MW: 81932.9 Da    PI: 6.2715
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK56.36.3e-18538586351
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                     ++++ +dl+++F++++ dAA +L+v+ ++LKr CR+yGI+RWP+ k k+
  XP_016468310.1 538 DSVNYDDLKQHFNKNLSDAAESLQVSRSTLKRLCRKYGIRRWPSSKRKK 586
                     678899*************************************988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.118524610IPR003035RWP-RK domain
PfamPF020426.6E-18540586IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.602.0E-5549576IPR009057Homeodomain-like
SuperFamilySSF542775.05E-18615704No hitNo description
Gene3DG3DSA:3.10.20.2403.0E-18620704No hitNo description
PROSITE profilePS5174519.598623705IPR000270PB1 domain
SMARTSM006662.9E-13623705IPR000270PB1 domain
PfamPF005642.9E-14624703IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEEIEKSQLP VNDDVVYEVY TSSEFKNYMG EPLSCSEERS NFHLMVFWSN NETESNFPHN  60
LIETSVKQKI KAALQRIETS QVILLQFWGL EKIEGRHFLT TSGQPFGLRY LYKGLCWYRK  120
HCQGYKYSVN NKGESGEQGT EKAHLFGPPA RVFQEKLPES STHVGYYTNE EFPMRDHAVR  180
CGVRTYLALP VFEPIGKNCV GVIELVTVWK GGYLTYEVEK VLNALEGVDL KCPKLYLQKA  240
RKVQAGKQSE RGEIKRMLKI VRETHKLPFV RVWIPCKNLE MDHNGMYRGC TEHVISASNE  300
VYYVADEEMD ANDHVYDDYY YDDMLCFRDI SKLQPLQKDQ GVVGKAFFSD ELCYCENITE  360
FSIIEYPLVH YARWCGLTSS FAICLKNGDE AYILELFLPP DNGDPTILLG SILSTMGQHF  420
QNFKFASGQE LGHDSSVQVI KVSSDKNVDY FHICQTRESP FMPEVCDEER RNWLMEGNEN  480
HIEKEAISEC TVQNSVDNGQ QQIMVQSDVL NTDIQVISEK QCVSVTHLQK ESRTRTKDSV  540
NYDDLKQHFN KNLSDAAESL QVSRSTLKRL CRKYGIRRWP SSKRKKTVNE SDCQPLNMLP  600
KKKKAITSAA TSTHANHVNS SSSITVKATY GEDMMKFKLY SSSRKDDLDR ELAKRLQLPI  660
GKFRIKYMDE DNDYIWIACD DDLSDCFNNA QSLGNNTIKM LVLPAAITYS LEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1583603RKKTVNESDCQPLNMLPKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468310.10.0PREDICTED: protein NLP6-like isoform X1
TrEMBLA0A1S3ZV600.0A0A1S3ZV60_TOBAC; protein NLP6-like isoform X1
STRINGXP_009605048.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13879911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.13e-85Nin-like family protein