PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468309.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 1013aa MW: 111630 Da PI: 5.6222

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	613	664	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ XP_016468309.1 613 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 664 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.621	598	684	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	616	664	IPR003035	RWP-RK domain
SMART	SM00666	1.7E-23	918	1000	IPR000270	PB1 domain
SuperFamily	SSF54277	6.21E-23	918	1004	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-26	918	999	No hit	No description
PROSITE profile	PS51745	24	918	1000	IPR000270	PB1 domain
CDD	cd06407	3.67E-38	919	999	No hit	No description
Pfam	PF00564	6.7E-17	919	999	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1013 aa Download sequence Send to blast
MSEPEEEMNH MFRSKPKDFL PRPPTQHTVA AENQNQREPS LMMDLDLDLD ASWSFDQIFA 60 AAAASNNPMS PFLVSTTASE QPCSPLWAFS DENEDNKPST GNALSAASLR LSSYPRFLTY 120 TGDHEAAAET LSVADDKKRI PLPIMGLTPL DYLDGSCIIK ERMTQALRYL KESTGERVLA 180 QVWAPVKNGG RYMLTTSGQP FVLDPDCNGL HQYRMVSLMY MFAVDGETDG VLGLPGRVYR 240 KKLPEWTPNV QYYSSKEFPR LNHALHYNVR GTLALPVFEP SGQSCVGVLE IIMTSQKINY 300 APEVDRVCKA LEAVNLKSSE ILDHQNTQIC NEGRQNALVE ILEILTAVCE TYKLPLAQTW 360 VPCRHRSVLA DGGGLKKSCS SFDGSCMGQV CMSTTDVSFY VVDAHMWGFR EACAEHHLQK 420 GQGVAGRAYA SQKSCFCEDI RLFCKTEYPL VHYARLFGLS SCFAICLRST YTGNDDYILE 480 FFLPPNDGDY NDQLALLNSL LLTMKQHFRS LRVASGEELE HDWGSVEVIK ASMEDKLGSR 540 LESVPTTKSL PQPASVVNGR VPPDLMEEQQ APVELNVAKV AEGVNGTAEA HNHASFSENK 600 GTGKKSERKR GKAEKTISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK 660 INKVNRSLSK LKRVIESVQG ADGTFSLTSL APNSLPVAVG SISWPAGMNG SPCNASEYHE 720 EKNELSNHGI PGSHEEAEPS NQMMESRIIG NEELSPKQNG FVREGSHRSR TGSGSREESA 780 GTPTSHGSCQ GSPFHANESS PQNELVNSPT QELSVKVGGS SEPARQTTGE INLSTAFLMP 840 GPYIPEHTQQ LFGGMLVEDA GSSHDLRNLC PAGDAMFDDR VPEYSWTNPP CSNGIAKDQV 900 SLPAEKMPQF STRPEVMSIT IKATYREDII RFRLLLSSGI FKLKEEVAKR LKLEVGTFDI 960 KYLDDDHEWV LIACDADLQE CVDISRSSGS NVVRLLVHDI MPNLGSSCES SGE

Sequence ? help Back to Top

Protein Sequence Length: 1013 aa Download sequence Send to blast

MSEPEEEMNH MFRSKPKDFL PRPPTQHTVA AENQNQREPS LMMDLDLDLD ASWSFDQIFA  60
AAAASNNPMS PFLVSTTASE QPCSPLWAFS DENEDNKPST GNALSAASLR LSSYPRFLTY  120
TGDHEAAAET LSVADDKKRI PLPIMGLTPL DYLDGSCIIK ERMTQALRYL KESTGERVLA  180
QVWAPVKNGG RYMLTTSGQP FVLDPDCNGL HQYRMVSLMY MFAVDGETDG VLGLPGRVYR  240
KKLPEWTPNV QYYSSKEFPR LNHALHYNVR GTLALPVFEP SGQSCVGVLE IIMTSQKINY  300
APEVDRVCKA LEAVNLKSSE ILDHQNTQIC NEGRQNALVE ILEILTAVCE TYKLPLAQTW  360
VPCRHRSVLA DGGGLKKSCS SFDGSCMGQV CMSTTDVSFY VVDAHMWGFR EACAEHHLQK  420
GQGVAGRAYA SQKSCFCEDI RLFCKTEYPL VHYARLFGLS SCFAICLRST YTGNDDYILE  480
FFLPPNDGDY NDQLALLNSL LLTMKQHFRS LRVASGEELE HDWGSVEVIK ASMEDKLGSR  540
LESVPTTKSL PQPASVVNGR VPPDLMEEQQ APVELNVAKV AEGVNGTAEA HNHASFSENK  600
GTGKKSERKR GKAEKTISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK  660
INKVNRSLSK LKRVIESVQG ADGTFSLTSL APNSLPVAVG SISWPAGMNG SPCNASEYHE  720
EKNELSNHGI PGSHEEAEPS NQMMESRIIG NEELSPKQNG FVREGSHRSR TGSGSREESA  780
GTPTSHGSCQ GSPFHANESS PQNELVNSPT QELSVKVGGS SEPARQTTGE INLSTAFLMP  840
GPYIPEHTQQ LFGGMLVEDA GSSHDLRNLC PAGDAMFDDR VPEYSWTNPP CSNGIAKDQV  900
SLPAEKMPQF STRPEVMSIT IKATYREDII RFRLLLSSGI FKLKEEVAKR LKLEVGTFDI  960
KYLDDDHEWV LIACDADLQE CVDISRSSGS NVVRLLVHDI MPNLGSSCES SGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468309.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3ZVF3	0.0	A0A1S3ZVF3_TOBAC; protein NLP6-like
STRING	XP_009605047.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]