PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468095.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 280aa MW: 30984.4 Da PI: 8.479

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468095.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.6	1.5e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl XP_016468095.1 44 KPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.803	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-33	41	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.51E-17	43	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-9	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-11	151	177	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MYSTLPIRNL GGSGDYFNNI HNSVSIDGTN LPGDACLVLT TDPKPRLRWT TELHERFVDA 60 VTQLGGPDKA TPKTIMRTMG VKGLTLYHLK SHLQKYRLGK QSAKEATDNS KDGNEELFIK 120 YSSFLRIAHV VCARANLLPQ LGPTATFVLS KVQRRLQLRI EAQGKYLQSI LEKACKAFSS 180 QSIESNGLEV NREELSELAM KVANDCEGIV NVPSLHEIAP SIENKNACHV PARLGDCLLD 240 DCFPSNGIGD LKKRPRAFAN ANGLPMESNT RQVEWMMSNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	4e-36	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	4e-36	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468095.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q94A57	7e-86	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1S3ZUJ7	0.0	A0A1S3ZUJ7_TOBAC; myb family transcription factor APL-like
STRING	XP_009619230.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.2	6e-90	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]