PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468061.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 824aa    MW: 89553.5 Da    PI: 6.5108
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.2e-20128183156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q+++Le++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k
  XP_016468061.1 128 KKKYHRHTPYQIQQLEAAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 183
                     79999************************************************999 PP
2START1693.3e-533365611206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+k+a+ ++p+W++      e +n +++ ++f++  +     +++ea +a+g v  ++  lve+l+d++ +W e++     + +t+
  XP_016468061.1 336 ELAFAAMNELLKLAEIGDPLWFRNFdgsgEALNLEDYARSFPPCIGmkpsnFTTEATKATGTVMINCLALVETLMDTS-RWVEMFSsivgRTSTI 429
                     57899******************9999999*************99999**9***************************.**************** PP

                     EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +viss        g lql++ae+q+ls lvp R + f+R+++q+ +g+w++vdvS+d  q+ ++  +   +++lpSg+++++++ng+skv+w+eh
  XP_016468061.1 430 DVISSSstsgsrnGNLQLIQAEFQVLSALVPvRQVKFLRFCKQHAEGVWAVVDVSIDAIQEGSQPREAGNCRRLPSGCIVQDLPNGYSKVIWIEH 524
                     **************************************************************998899999************************ PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++++++h+ +r++++sg+ +ga++w atlqrqce+
  XP_016468061.1 525 MEYDENTIHNFYRPFIRSGRGFGAQRWIATLQRQCEC 561
                     ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21102187IPR009057Homeodomain-like
SuperFamilySSF466891.41E-19111185IPR009057Homeodomain-like
PROSITE profilePS5007117.637125185IPR001356Homeobox domain
SMARTSM003898.7E-16127189IPR001356Homeobox domain
PfamPF000461.7E-17128183IPR001356Homeobox domain
CDDcd000863.41E-17128185No hitNo description
PROSITE profilePS5084838.619327564IPR002913START domain
SuperFamilySSF559613.43E-28329561No hitNo description
CDDcd088754.42E-106331560No hitNo description
SMARTSM002342.5E-34336561IPR002913START domain
PfamPF018522.0E-46336561IPR002913START domain
SuperFamilySSF559611.65E-12607817No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MSFGGFIGSS SSGGNGGGDG GSGVSRVVAD SPYNNTMPPA ATIAHQSQQL VTSPLTQPMF  60
NSSPLSLALK PKMEGIGDMG LIGENFDAVA MGRSSREDEY ESRSGSDNLD GGASGDDQDT  120
PLGKSSRKKK YHRHTPYQIQ QLEAAFKENP HPDEKARLEL GKRLTLESRQ VKFWFQNRRT  180
QMKTQLERHE NAILKQENDK LRIENIAMKE AMRSPMCGHC GGQAILGEIH IEEHHLRIEN  240
ARLRDELNRI CVLANKFLGR PLGSFPGTMP PGMANSGLEL AVGRNGFGAM NSVDTALPMG  300
LDFGNGLSSP LTMMSPRPTP SMSNTDVSFD KSMLMELAFA AMNELLKLAE IGDPLWFRNF  360
DGSGEALNLE DYARSFPPCI GMKPSNFTTE ATKATGTVMI NCLALVETLM DTSRWVEMFS  420
SIVGRTSTID VISSSSTSGS RNGNLQLIQA EFQVLSALVP VRQVKFLRFC KQHAEGVWAV  480
VDVSIDAIQE GSQPREAGNC RRLPSGCIVQ DLPNGYSKVI WIEHMEYDEN TIHNFYRPFI  540
RSGRGFGAQR WIATLQRQCE CLAVITSSAV PSGDSAAVVS PSGRRSIAML ARRITRNFCG  600
GVCATFYKWE PIQTGTAEDT KLMMRKSIGE PGEPPGIVLS ATRTIWLPVT HQRLFDFLRN  660
EQTRSQWDVL SHGGPMHQIV HIAKGQDLGN SISLFRANAA ASDANQNSML ILQDSCTDVS  720
GSIVAYAAVD TAEMNVVMSG GDSSCVAFLP SGFAIVPDCF QNSNNGMLEK EDNGGSSNGS  780
LLTLGFQILV NSLPAAKLTM ESVDTVNALI SRTLQGIKTA FQCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468061.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A1S3ZUI30.0A0A1S3ZUI3_TOBAC; homeobox-leucine zipper protein HDG1-like isoform X1
STRINGXP_009774401.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]