PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468021.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 302aa    MW: 33436.5 Da    PI: 7.3935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52e-07168194430
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                     +h+ +Er RR++iN ++  L+el+P +
  XP_016468021.1 168 SHSLAERARREKINARMKLLQELVPGC 194
                     8************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-8162196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.09E-5162196No hitNo description
PROSITE profilePS508889.464164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8167196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-5168194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGEMGTASSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYPPPPPP PIFPSDAALI  60
DRAFKFSVFA AAAGISPESN STLSNSGSKS LLVKQEPLDS EFNQNSSPIT VSNPTVNQKT  120
TKRKEREKKV KETSSKKGKK STNNTSEDDA EKLPYVHVRA RRGQATDSHS LAERARREKI  180
NARMKLLQEL VPGCNKFLSM RLAAVNPSVD FNLDNLFAPE RSGSHVESNL PDMIVPPIWA  240
DGQTSGNRNQ YQHLWHLEGF HQPVWGRVED NSSFITPENS LLTYDSSANS ASLHPNQLKM  300
EL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468021.10.0PREDICTED: transcription factor bHLH60-like isoform X2
TrEMBLA0A1S3ZUE50.0A0A1S3ZUE5_TOBAC; transcription factor bHLH60-like isoform X2
STRINGXP_009795428.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-47bHLH family protein