PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016467956.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 412aa MW: 46413.2 Da PI: 4.4069 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g XP_016467956.1 49 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 98 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.05E-31 | 48 | 105 | No hit | No description |
Pfam | PF00847 | 1.0E-13 | 49 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 49 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 49 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 49 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-19 | 49 | 107 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.1E-8 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MARKRRASEG LGENKTRNDD QAGNAAWNEM VKEAAAAAAL GGARRARKRF VGVRQRPSGR 60 WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGAN TRTNFWPSSS SSSSTPALPS 120 KITNLLLNRL KARNNSLAAA TSAASSEPVE IHDQDKQLEE YRDETAYFSD SQFMEYLKDP 180 EDQITDNNMI SNTSAINTNN FTNTLEACLT ENDYSIVQPV MKSDEINWSG GEINNNLVED 240 EEEIEEENDS TDIGDVEPIN FHFVDEIGSS CYYSPFEIAE EINSTDTMDQ QGIFYGDESC 300 ISEAMRRMNY ERKFSASLYA FNGITECLKL KLKSGGVVQR ERCEQLSRLR NACKRNRKEE 360 EEDEKKINEE GISTKMGERK ETECTSQSSI TYESELSLWS SIDLPPICAF FT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 49 | 105 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016467956.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A1S3ZU86 | 0.0 | A0A1S3ZU86_TOBAC; dehydration-responsive element-binding protein 2C-like | ||||
STRING | XP_009625277.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-21 | related to AP2 11 |