PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016467940.1 | ||||||||
Common Name | ERF4, ERF-4, ERF5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 291aa MW: 32878 Da PI: 6.9557 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 144 | 194 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g XP_016467940.1 144 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 194 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.70E-32 | 143 | 202 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 143 | 203 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-15 | 144 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.131 | 144 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-23 | 144 | 204 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-37 | 144 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 145 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 168 | 184 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MASPQENCTT LDLIRQHLLD DNVFMEHYCP QPILYSQSSS SSESLNSIAS ELNNETFSFE 60 PTLKYADTAQ SSNLDISSFF NNSKTEFDSF EFETKPNVSA ARISSNSPKQ TSFKERKPSL 120 NIAIPMKQQE VVQKVEVVPT EKKHYRGVRQ RPWGKFAAEI RDPNRKGTRV WLGTFDTAIE 180 AAKAYDRAAF KLRGSKAIVN FPLEVANFKQ QDNEILQPAN SGRKRMRETE NEEIVIKKEV 240 KREERVPAAA APLTPSSWSA IWEGEDGKGI FEVPPLSPLS PHMAYSQLVM I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-30 | 143 | 205 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | TOBBY4C | 0.0 | D38125.1 Nicotiana tabacum EREBP-4 mRNA for ethylene-responsive element binding protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312428.1 | 0.0 | ethylene-responsive transcription factor 5 | ||||
Refseq | XP_009594472.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
Swissprot | Q40478 | 0.0 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A1S3ZU49 | 0.0 | A0A1S3ZU49_TOBAC; ethylene-responsive transcription factor 5 | ||||
STRING | XP_009594472.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51190.1 | 9e-52 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|