PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016467729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 438aa MW: 47701.5 Da PI: 5.5842 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.7e-14 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W++I+r+ Rt+ q+ s+ qk+ XP_016467729.1 121 AWTAEEHRLFLQGLEKYGRGDWRSISRHCVVSRTPTQVASHAQKF 165 7*****************************9************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 5.443 | 30 | 84 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0019 | 31 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.44E-8 | 34 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.85E-5 | 34 | 80 | No hit | No description |
PROSITE profile | PS51294 | 18.979 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-16 | 116 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-16 | 118 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-11 | 119 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.19E-11 | 121 | 166 | No hit | No description |
Pfam | PF00249 | 4.6E-11 | 121 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MEDEIAFSHY SVLQKISAKG LLFCVAMKTC NSSSWTKEED RAFETALAIY AGDSNQLMKI 60 AAAVPRKSIP EILQHYKKLV DDINDIEAGK VPLPQYGRMQ GCSSRRSRLS GAEVERRKGV 120 AWTAEEHRLF LQGLEKYGRG DWRSISRHCV VSRTPTQVAS HAQKFFSRLK DNNKAKRRRS 180 IHDITSVDAA TTEPSQGQKT EKLNGPCGGQ LQWPITDYVT EAFDPGMFPL PGPVTNCMTD 240 AIGGPSGVNH ENFPFGTAVV SELNSSHPNV DDEFLLGVED LITVPTQGTS EAWHGVDTTT 300 FPSLSWQPSF AGGAGMYTHP VNNVEYEMEE LITKQLVEAT QVGPIVNTTR LPLSIADHIG 360 VHGCTASSSG AKNGFESTVG APEAGLSVNS NPLMSIPGTS GGGVYPNFNA SIKDDNIFDL 420 EDLFPDHMIG FYEKDGKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016467729.1 | 0.0 | PREDICTED: uncharacterized protein LOC107790243 isoform X2 | ||||
Refseq | XP_018622197.1 | 0.0 | PREDICTED: uncharacterized protein LOC104121509 isoform X2 | ||||
TrEMBL | A0A1S3ZTS0 | 0.0 | A0A1S3ZTS0_TOBAC; uncharacterized protein LOC107790243 isoform X2 | ||||
STRING | XP_009631817.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-53 | MYB family protein |