PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016467488.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 401aa MW: 46708.1 Da PI: 9.5135

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016467488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.8e-32	99	152	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ XP_016467488.1 99 PRLRWTPELHRSFVHAIERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 152 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.094	95	155	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-30	95	153	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-15	97	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-23	99	154	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-8	100	151	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MTENSMKQAN EEMMTNTMEY IMEKTSSDSS SQSKLVSFVD LNEDNKGESD EEEEVIEISV 60 ENSNEKTTDE GNSENNNNSS GNGRVEKKNV RHYVRSKMPR LRWTPELHRS FVHAIERLGG 120 QERATPKLVL QLMNVRGLSI AHVKSHLQMY RSKKLDESGQ VLGRNYRAMQ GRSYFYGNVG 180 QRYNPRQDFK MKNGAIVLAR NFNYDHDHVK GHFRNSFSRP PYQAKDIFSR YLQWSSNQGS 240 VLNTTREKLC TPRQFQKNGG HEIGPVRSSQ FLEEKRWPPS EFTANQLEEK IADFSNICSA 300 KNSQYLLQQN VAQPYSKWNC RYNTLEQNLE TPTRLEMKED KSFMTGKDWL PDLQLRLSRS 360 TENKNEKNTH HHSKRMDHQS EINTMLSLSL PTYSLSEPKR K

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MTENSMKQAN EEMMTNTMEY IMEKTSSDSS SQSKLVSFVD LNEDNKGESD EEEEVIEISV  60
ENSNEKTTDE GNSENNNNSS GNGRVEKKNV RHYVRSKMPR LRWTPELHRS FVHAIERLGG  120
QERATPKLVL QLMNVRGLSI AHVKSHLQMY RSKKLDESGQ VLGRNYRAMQ GRSYFYGNVG  180
QRYNPRQDFK MKNGAIVLAR NFNYDHDHVK GHFRNSFSRP PYQAKDIFSR YLQWSSNQGS  240
VLNTTREKLC TPRQFQKNGG HEIGPVRSSQ FLEEKRWPPS EFTANQLEEK IADFSNICSA  300
KNSQYLLQQN VAQPYSKWNC RYNTLEQNLE TPTRLEMKED KSFMTGKDWL PDLQLRLSRS  360
TENKNEKNTH HHSKRMDHQS EINTMLSLSL PTYSLSEPKR K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016467487.1	0.0	PREDICTED: uncharacterized protein LOC107790101
Refseq	XP_016467488.1	0.0	PREDICTED: uncharacterized protein LOC107790101
Refseq	XP_016467489.1	0.0	PREDICTED: uncharacterized protein LOC107790101
Refseq	XP_016467491.1	0.0	PREDICTED: uncharacterized protein LOC107790101
Refseq	XP_016467492.1	0.0	PREDICTED: uncharacterized protein LOC107790101
Refseq	XP_016467493.1	0.0	PREDICTED: uncharacterized protein LOC107790101
TrEMBL	A0A1S3ZT67	0.0	A0A1S3ZT67_TOBAC; uncharacterized protein LOC107790101
STRING	XP_009802187.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-36	G2-like family protein