PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016467380.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 750aa MW: 82674.6 Da PI: 4.9524

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016467380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.6	2.8e-20	91	146	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ XP_016467380.1 91 KRYHRHTQHQIQEMENFFKNCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 146 567899***********************************************995 PP
2	START	177.3	9.3e-56	272	492	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++e++++a+ +ep+W s+ +n++e+++ f+++ + +++ea+++++vv+ ++ +lve+l+d++ +W+ ++ a t+ XP_016467380.1 272 ELAVAAMEEFIQMAQMGEPLWLPSVdrrtNFLNEEEYVRLFPTGIGpkiagFKTEASKDTAVVFLNPINLVEILMDTN-KWSSMFSsivsTAVTM 365 57899******************999999********999****************************.***9999999 PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +v+s+g galq+++ae+q++ p vp Rd +fvRy++++ +g w++vdvS+d ++ p ++s+ +++pSg+li+ ++ng+skvtw+ehv XP_016467380.1 366 DVLSTGvagnfnGALQVIFAEFQVPFPQVPtRDCYFVRYCKRSVDGIWAVVDVSLDYLRPIP-TASC---QRRPSGCLIQAMPNGYSKVTWMEHV 456 ************************************************************.5655...55******************* PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 + ++ + +++++l++sgla+gak+w atl+rqce+ XP_016467380.1 457 EADDTAIYNIYKPLLNSGLAFGAKRWIATLDRQCER 492 ********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-20	70	145	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.19E-19	80	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.261	87	147	IPR001356	Homeobox domain
SMART	SM00389	3.4E-18	88	151	IPR001356	Homeobox domain
Pfam	PF00046	7.8E-18	91	145	IPR001356	Homeobox domain
CDD	cd00086	6.00E-19	91	148	No hit	No description
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	1.72E-33	263	494	No hit	No description
PROSITE profile	PS50848	39.526	263	495	IPR002913	START domain
CDD	cd08875	7.86E-117	267	491	No hit	No description
SMART	SM00234	7.8E-50	272	492	IPR002913	START domain
Pfam	PF01852	4.7E-45	273	492	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.2E-5	331	492	IPR023393	START-like domain
SuperFamily	SSF55961	2.82E-23	523	739	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MNPANQFSSM IRNDGNDGGY VSSSSGLPLG QSGNIMESQI HSLDMASNTS ESELMPLLME 60 EEFDSKSGSH DNNEEGKSSD EQDVNQPERI KRYHRHTQHQ IQEMENFFKN CPHPDDKQRK 120 ELSRELGLEP LQVKFWFQNK RTQMKNQNDR SELSSLRDEN EKLRTEHVQL REALNNATSC 180 PICGGPQISL GEMSFEENQL RIENARLKEE VDRISAFAAK YVGKPVSSLN VYSPSVTPPS 240 SLDLGNAFGN NREVIRSSFN GPTEAEKPFI IELAVAAMEE FIQMAQMGEP LWLPSVDRRT 300 NFLNEEEYVR LFPTGIGPKI AGFKTEASKD TAVVFLNPIN LVEILMDTNK WSSMFSSIVS 360 TAVTMDVLST GVAGNFNGAL QVIFAEFQVP FPQVPTRDCY FVRYCKRSVD GIWAVVDVSL 420 DYLRPIPTAS CQRRPSGCLI QAMPNGYSKV TWMEHVEADD TAIYNIYKPL LNSGLAFGAK 480 RWIATLDRQC ERLASAMATN LPDDDMTNMV LGGPEGRRSV LKLAERMVIS YCSGVSATAA 540 HQWTTLSGSG SENDVRIMFR KSINDPGRPP GIVMCAATSF WLPISAKTVF DFLRDVNTRS 600 EWDILSNGSV IQRLVYIANG RETGSSVSIL RVNSSAISSQ NNMLILQESS TDPTGSFVVY 660 APVDVPAMNT VINGGDPEYV ALLPSGFAIL PDGPPGRIAG GSLLTIAFQI FVDSVPTAKL 720 SLGSVATVNK LIACTVDKIR AALLSDTPRC

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MNPANQFSSM IRNDGNDGGY VSSSSGLPLG QSGNIMESQI HSLDMASNTS ESELMPLLME  60
EEFDSKSGSH DNNEEGKSSD EQDVNQPERI KRYHRHTQHQ IQEMENFFKN CPHPDDKQRK  120
ELSRELGLEP LQVKFWFQNK RTQMKNQNDR SELSSLRDEN EKLRTEHVQL REALNNATSC  180
PICGGPQISL GEMSFEENQL RIENARLKEE VDRISAFAAK YVGKPVSSLN VYSPSVTPPS  240
SLDLGNAFGN NREVIRSSFN GPTEAEKPFI IELAVAAMEE FIQMAQMGEP LWLPSVDRRT  300
NFLNEEEYVR LFPTGIGPKI AGFKTEASKD TAVVFLNPIN LVEILMDTNK WSSMFSSIVS  360
TAVTMDVLST GVAGNFNGAL QVIFAEFQVP FPQVPTRDCY FVRYCKRSVD GIWAVVDVSL  420
DYLRPIPTAS CQRRPSGCLI QAMPNGYSKV TWMEHVEADD TAIYNIYKPL LNSGLAFGAK  480
RWIATLDRQC ERLASAMATN LPDDDMTNMV LGGPEGRRSV LKLAERMVIS YCSGVSATAA  540
HQWTTLSGSG SENDVRIMFR KSINDPGRPP GIVMCAATSF WLPISAKTVF DFLRDVNTRS  600
EWDILSNGSV IQRLVYIANG RETGSSVSIL RVNSSAISSQ NNMLILQESS TDPTGSFVVY  660
APVDVPAMNT VINGGDPEYV ALLPSGFAIL PDGPPGRIAG GSLLTIAFQI FVDSVPTAKL  720
SLGSVATVNK LIACTVDKIR AALLSDTPRC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269\|PubMed:11846882}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802527.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X4
Refseq	XP_016467380.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like
Swissprot	Q6ZAR0	0.0	ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBL	A0A1S3ZSJ6	0.0	A0A1S3ZSJ6_TOBAC; homeobox-leucine zipper protein HDG2-like
TrEMBL	A0A1U7YEI6	0.0	A0A1U7YEI6_NICSY; homeobox-leucine zipper protein HDG2-like isoform X4
STRING	XP_009802524.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA932	24	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	0.0	homeodomain GLABROUS 2

Publications ? help Back to Top
Lee JH, et al. Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Plant Cell, 2008. 20(1): p. 152-67 [PMID:18223036] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Dou M,Cheng S,Zhao B,Xuan Y,Shao M The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice. Int J Mol Sci, 2016. 17(3): p. 233 [PMID:26927068] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]