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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_016467000.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 730aa MW: 80085.5 Da PI: 5.8472 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 56.6 | 4.3e-18 | 59 | 114 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t+ q++e+e++F+++++p+ ++r+eL k+l L+ qVk+WFqN+R+++k
XP_016467000.1 59 KKRYHRHTQIQIQEMESFFKECPHPDDKQRKELGKRLALEPLQVKFWFQNKRTQMK 114
688899***********************************************998 PP
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| 2 | START | 214.3 | 4.4e-67 | 248 | 468 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82
ela +a++el++ a+ +ep+W +s+ e + ++e++++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ +a +a+tl
XP_016467000.1 248 ELAVAAMEELIRIAQTGEPLWISSPdnstETLCEEEYVRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSVFAglvsRAMTL 341
57899********************998888899*********999********************************.**************** PP
EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
ev+s+g galq+m+ae+q++splvp R+ +fvRy++ +++g+w++vdvS+d+ ++ ++ R++++pSg+li++++ng+skvtw eh+
XP_016467000.1 342 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHSDGTWAVVDVSLDNLRPTST----SRCRRRPSGCLIQELPNGYSKVTWFEHI 432
************************************************************875....9*************************** PP
E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
++++r +h+++r+lv+sgla+gak+wvatl+rqce+
XP_016467000.1 433 EVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 468
**********************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 40 | 114 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 8.36E-18 | 41 | 116 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 15.872 | 56 | 116 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 1.4E-15 | 57 | 120 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 9.7E-16 | 59 | 114 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 3.42E-16 | 59 | 117 | No hit | No description |
| SuperFamily | SSF55961 | 4.05E-37 | 239 | 470 | No hit | No description |
| PROSITE profile | PS50848 | 46.166 | 239 | 471 | IPR002913 | START domain |
| CDD | cd08875 | 1.49E-128 | 243 | 467 | No hit | No description |
| SMART | SM00234 | 1.2E-67 | 248 | 468 | IPR002913 | START domain |
| Pfam | PF01852 | 3.0E-56 | 249 | 468 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 1.3E-6 | 339 | 468 | IPR023393 | START-like domain |
| SuperFamily | SSF55961 | 7.99E-27 | 488 | 722 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009845 | Biological Process | seed germination | ||||
| GO:0009913 | Biological Process | epidermal cell differentiation | ||||
| GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
| GO:0048825 | Biological Process | cotyledon development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 730 aa Download sequence Send to blast |
MFQPNMFESH HHLLDMSHKS PENELDLIPD DEFDTKSGTD IMENPSGDDQ DPNQRPNKKK 60 RYHRHTQIQI QEMESFFKEC PHPDDKQRKE LGKRLALEPL QVKFWFQNKR TQMKAQHERH 120 ENSQLRNENE KLRAENIRYK EALGNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR 180 ISGIAAKYVG KPMLNYPNLP STGSTRSLDL GVGSLGPQTG LVGEMYSAGD LLRSVSGPTD 240 ADKPIIIELA VAAMEELIRI AQTGEPLWIS SPDNSTETLC EEEYVRTFPR GIGPKPLGLK 300 SEASRESAVV IMNHINLVEI LMDVNQWSSV FAGLVSRAMT LEVLSTGVAG NYNGALQVMT 360 AEFQVPSPLV PTRENYFVRY CKHHSDGTWA VVDVSLDNLR PTSTSRCRRR PSGCLIQELP 420 NGYSKVTWFE HIEVDDRAVH NIYRPLVNSG LAFGAKRWVA TLDRQCERLA SAMANNIPTG 480 DIGVITSPEG RRSMLKLAER MVMSFCAGVG ASTAHTWTTL SGSGADDVRV MTRKSIDDPG 540 RPPGIVLSAA TSFWLPVPPK RVFDFLRDEN SRSEWDILSN GGLVQEMAHI ANGRDPGNCV 600 SLLRVNSGNS SQSNMLILQE SSTDSTGSYV IYAPVDIVAM NVVLSGGDPD YVALLPSGFA 660 ILPDGSTSGH CGGNNVAEVG NGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER 720 IKTAVACDNA |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009799795.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_009799796.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_009799798.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_009799799.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_009799800.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_016466997.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_016466998.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_016466999.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_016467000.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_016467001.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
| TrEMBL | A0A1S3ZRJ5 | 0.0 | A0A1S3ZRJ5_TOBAC; homeobox-leucine zipper protein MERISTEM L1-like | ||||
| TrEMBL | A0A1U7YLT3 | 0.0 | A0A1U7YLT3_NICSY; homeobox-leucine zipper protein MERISTEM L1-like | ||||
| STRING | XP_009799795.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G04890.1 | 0.0 | protodermal factor 2 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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