PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466982.1 | ||||||||
Common Name | ERF115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 26022.9 Da PI: 8.4638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.4 | 2.3e-15 | 106 | 155 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y GV +++ +g + AeIrdp +g +r +lg++ t+e+Aa a+++a+ k++ XP_016466982.1 106 RYIGVKRRP-WGTFSAEIRDPERRG--ARLWLGTYETPEDAALAYDQAAFKIR 155 699***9*9.**********84444..***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.22E-25 | 106 | 166 | No hit | No description |
SMART | SM00380 | 1.4E-28 | 106 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 106 | 165 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.957 | 106 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-28 | 106 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-10 | 106 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-7 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-7 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MNPNNATFSF SELDFLQSIE NHLLNYDSDF SEILSPMSSS NALPNSPSSS FGSFPSAENS 60 LDTSLWDENF EETIPNLQLE EKSESEEETK GHVVAREKTT TQDWRRYIGV KRRPWGTFSA 120 EIRDPERRGA RLWLGTYETP EDAALAYDQA AFKIRSSRAR LNFPHLIGSN MPKPARVTAR 180 RSRTRSPEPS SSSCTSSSEK GTRKRKIDLI NSIAKAKFIR HSWNLQMLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-24 | 105 | 164 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-24 | 105 | 169 | 4 | 68 | ATERF1 |
3gcc_A | 4e-24 | 105 | 169 | 4 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB828149 | 0.0 | AB828149.1 Nicotiana tabacum ERF115 mRNA for ethylene response factor 115, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312404.1 | 1e-168 | ethylene-responsive transcription factor 2-like | ||||
TrEMBL | S0BDM4 | 1e-166 | S0BDM4_TOBAC; Ethylene response factor 115 | ||||
STRING | XP_009628238.1 | 1e-124 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-32 | ethylene-responsive element binding factor 13 |
Publications ? help Back to Top | |||
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