PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466967.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27825.6 Da    PI: 8.2879
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.26.7e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fs++gklye++s
  XP_016466967.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIVFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box89.65.7e-3078166492
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                      + ++  + +++s+++e+ kLk+++e+Lqr qRhllGedL++L++ +L +Le qL++slk+iRs++++l+l+q+ +lq kek   e+nk
  XP_016466967.1  78 LEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGEDLGPLNIDDLDHLEVQLDNSLKHIRSTRTQLMLDQLTDLQSKEKLWLEANK 166
                     56666677889**********************************************************************99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.025161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.61E-43278No hitNo description
SuperFamilySSF554553.14E-33278IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2485166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.19888177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIVFSN RGKLYEFCSS  60
NNMLKTLDRY QKCSYGTLEV NRSIKDNEQS SYREYLKLKA KYESLQRYQR HLLGEDLGPL  120
NIDDLDHLEV QLDNSLKHIR STRTQLMLDQ LTDLQSKEKL WLEANKLEEI YAENNLQQPW  180
GGGEQSITYG QQHAQSQGFF QPLDCNSILQ IGRYDPITTS SQITAVTNAQ NVNGMVPGWM  240
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-2775166195Developmental protein SEPALLATA 3
4ox0_B2e-2775166195Developmental protein SEPALLATA 3
4ox0_C2e-2775166195Developmental protein SEPALLATA 3
4ox0_D2e-2775166195Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3020150.0AJ302015.1 Lycopersicon esculentum mRNA for MADS-box protein (TM29 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466967.11e-180PREDICTED: developmental protein SEPALLATA 1-like isoform X3
SwissprotQ8LLR21e-127MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3ZRI81e-178A0A1S3ZRI8_TOBAC; developmental protein SEPALLATA 1-like isoform X3
STRINGXP_009608615.11e-176(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.15e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]