PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466965.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28451.3 Da    PI: 8.5633
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.26.9e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fs++gklye++s
  XP_016466965.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIVFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box94.32e-31781744100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + ++  + +++s+++e+ kLk+++e+Lqr qRhllGedL++L++ +L +Le qL++slk+iRs++++l+l+q+ +lq kek   e+nk L++kl
  XP_016466965.1  78 LEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGEDLGPLNIDDLDHLEVQLDNSLKHIRSTRTQLMLDQLTDLQSKEKLWLEANKVLERKL 172
                     56666677889***********************************************************************************9 PP

           K-box  99 ee 100
                     ee
  XP_016466965.1 173 EE 174
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.025161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002654.87E-43278No hitNo description
SuperFamilySSF554553.66E-33278IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2685172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.53688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIVFSN RGKLYEFCSS  60
NNMLKTLDRY QKCSYGTLEV NRSIKDNEQS SYREYLKLKA KYESLQRYQR HLLGEDLGPL  120
NIDDLDHLEV QLDNSLKHIR STRTQLMLDQ LTDLQSKEKL WLEANKVLER KLEEIYAENN  180
LQQPWGGGEQ SITYGQQHAQ SQGFFQPLDC NSILQIGRYD PITTSSQITA VTNAQNVNGM  240
VPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-28751721101Developmental protein SEPALLATA 3
4ox0_B4e-28751721101Developmental protein SEPALLATA 3
4ox0_C4e-28751721101Developmental protein SEPALLATA 3
4ox0_D4e-28751721101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3020150.0AJ302015.1 Lycopersicon esculentum mRNA for MADS-box protein (TM29 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466965.10.0PREDICTED: developmental protein SEPALLATA 1-like isoform X1
SwissprotQ8LLR21e-131MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3ZR140.0A0A1S3ZR14_TOBAC; developmental protein SEPALLATA 1-like isoform X1
STRINGXP_009608615.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]