PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466964.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28611.4 Da    PI: 10.1303
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68.2e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  XP_016466964.1  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSS 59
                    79***********************************************96 PP
2K-box100.23e-3377173399
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++ +++++  +e+++ e+ kL ++ie +qr++Rh+ G+dL++Lsl+eLq+Leqq++++lk+iRs+Kn+l++e+i+elqkkek+lqe+n++++kk
  XP_016466964.1  77 ERKLNANDSDPMENWTLEYPKLMSRIELIQRNIRHYTGQDLDPLSLRELQSLEQQIDTALKRIRSRKNQLMHESISELQKKEKALQEQNNSMTKK 171
                     566677788889**********************************************************************************9 PP

           K-box  98 le 99 
                     l+
  XP_016466964.1 172 LK 173
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-34292IPR002100Transcription factor, MADS-box
CDDcd002654.65E-40276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.3E-2884172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.63688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFEYSSE  60
SSMENILERY ESYSYAERKL NANDSDPMEN WTLEYPKLMS RIELIQRNIR HYTGQDLDPL  120
SLRELQSLEQ QIDTALKRIR SRKNQLMHES ISELQKKEKA LQEQNNSMTK KLKDKEKMQS  180
GQTQPNSGQN SATFMLPQQP PPQSHQLPNL TIGGPFEATR VRNTDGGQAR YGSNSLVPPW  240
MIRHVNTEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-20174173MEF2 CHIMERA
6byy_B1e-20174173MEF2 CHIMERA
6byy_C1e-20174173MEF2 CHIMERA
6byy_D1e-20174173MEF2 CHIMERA
6bz1_A1e-20174173MEF2 CHIMERA
6bz1_B1e-20174173MEF2 CHIMERA
6bz1_C1e-20174173MEF2 CHIMERA
6bz1_D1e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352450.0AF335245.1 Petunia x hybrida MADS-box transcription factor FBP29 (FBP29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608614.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X4
RefseqXP_016466964.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN61e-110FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1S3ZRN00.0A0A1S3ZRN0_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X2
STRINGXP_009608611.11e-176(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]