PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016466919.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 960aa MW: 107364 Da PI: 6.3525

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016466919.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.3	1.6e-41	110	187	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC +dls+ak+yhrrhkvCe+hsk++ +lvs+l+qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+qa XP_016466919.1 110 VCQVDGCGVDLSNAKDYHRRHKVCEMHSKSSRALVSNLMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTQA 187 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.7E-33	105	172	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.59	108	185	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-38	109	188	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-30	111	184	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	9.02E-8	735	854	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.3E-5	742	854	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.20E-7	743	853	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MEARMGGEVQ LFKKSLEWDP NDWKWDGDLF IAKPKIPSSN YQFFPLETGN SSSSCSDEVN 60 LGEFEKRRRE NDENVEYDSA SLSLKLGEQR GHPREFGKRT KLTTTSSRAV CQVDGCGVDL 120 SNAKDYHRRH KVCEMHSKSS RALVSNLMQR FCQQCSRFHA LEEFDEGKRS CRRRLAGHNK 180 RRRKTQADSD DNSKTLNDVQ TSGYSLISLL KILSNMHSNR TNHIEDQDLL SHLLRSLASQ 240 GVPNGDNNLS GLLQASSNLL SNRSPSRNSD IVSLVSNGSQ GPPILKEQHF ATLAAQAPQR 300 SSDVHDVRLE DVRTESCRSP GTSFPNQNSS PAYAQARKSS AGRSKLINFD LNDVYDGSDD 360 GGENLDRSPL PADRGIGPLE CRSWLQQDSH QSSPPSRNSD SASTQSPSSS SSDAQSRTDR 420 IVFKLFGKDP SDFPYVLRAQ ILDWLSHSPT EIESYIRPGC IVLTVYLRLP ESAWEELCCD 480 LSSSLSRLLD VPDDSFWRKG WIYIRVQNQI AFVHDGKLLL DVPLPSETIE HTSILSVKPI 540 AVPVSDRAQF IVKGYNLTKP STRLLCALEG NYLVTEANDE VEHVDGVNKY AKLQLMDLTC 600 SIPAVSGRGF IEVEDHGLSN GFFPIIIAEE DVCSEIRMLE SAIELTSAEN VNGLTNNMEV 660 KSQAMDFIHE MGWLLHRNNL KARLGNSNAV LFPLKRFKWL MEFSIDHDWC AVVRKLLNLL 720 LDGTVGGEEN SFLKVSLSEM GLLHKAVRRN SKPLVELLLT YTPNEVADEL CSEYQSLVGV 780 DGKFLFRPDS VGPAGLTPLH VAAGIDGYED VLDALTDDPG MVAVEAWKNT RDSAGFTPED 840 YARLRGHYSY IHLVQRKINR VTTKHIVVDI PNIMSGGNSN QKDECEVSQT ERRLIQPCGM 900 CDRKLGYGSR SRSLLYRPVM FSMVALAAVC VCVALLFKSS PEVLYIFRPF RWEMLEYGSS

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MEARMGGEVQ LFKKSLEWDP NDWKWDGDLF IAKPKIPSSN YQFFPLETGN SSSSCSDEVN  60
LGEFEKRRRE NDENVEYDSA SLSLKLGEQR GHPREFGKRT KLTTTSSRAV CQVDGCGVDL  120
SNAKDYHRRH KVCEMHSKSS RALVSNLMQR FCQQCSRFHA LEEFDEGKRS CRRRLAGHNK  180
RRRKTQADSD DNSKTLNDVQ TSGYSLISLL KILSNMHSNR TNHIEDQDLL SHLLRSLASQ  240
GVPNGDNNLS GLLQASSNLL SNRSPSRNSD IVSLVSNGSQ GPPILKEQHF ATLAAQAPQR  300
SSDVHDVRLE DVRTESCRSP GTSFPNQNSS PAYAQARKSS AGRSKLINFD LNDVYDGSDD  360
GGENLDRSPL PADRGIGPLE CRSWLQQDSH QSSPPSRNSD SASTQSPSSS SSDAQSRTDR  420
IVFKLFGKDP SDFPYVLRAQ ILDWLSHSPT EIESYIRPGC IVLTVYLRLP ESAWEELCCD  480
LSSSLSRLLD VPDDSFWRKG WIYIRVQNQI AFVHDGKLLL DVPLPSETIE HTSILSVKPI  540
AVPVSDRAQF IVKGYNLTKP STRLLCALEG NYLVTEANDE VEHVDGVNKY AKLQLMDLTC  600
SIPAVSGRGF IEVEDHGLSN GFFPIIIAEE DVCSEIRMLE SAIELTSAEN VNGLTNNMEV  660
KSQAMDFIHE MGWLLHRNNL KARLGNSNAV LFPLKRFKWL MEFSIDHDWC AVVRKLLNLL  720
LDGTVGGEEN SFLKVSLSEM GLLHKAVRRN SKPLVELLLT YTPNEVADEL CSEYQSLVGV  780
DGKFLFRPDS VGPAGLTPLH VAAGIDGYED VLDALTDDPG MVAVEAWKNT RDSAGFTPED  840
YARLRGHYSY IHLVQRKINR VTTKHIVVDI PNIMSGGNSN QKDECEVSQT ERRLIQPCGM  900
CDRKLGYGSR SRSLLYRPVM FSMVALAAVC VCVALLFKSS PEVLYIFRPF RWEMLEYGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-31	110	184	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016466919.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S3ZRI1	0.0	A0A1S3ZRI1_TOBAC; squamosa promoter-binding-like protein 1
STRING	XP_009617528.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]