PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 377aa MW: 43063 Da PI: 5.9697 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_016466799.1 14 KGPWTPEEDQKLIDYIQKYGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.8e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_016466799.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.597 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.04E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.342 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.86E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KYGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILN PSLYNSSHQM NLSRLFGHVQ PLVNPEVLRL ATSLLSSQRQ 180 NSNFLMPNNL QENQICNPQV QNQLPQMVQI TSQVQTPIQD IPTCTTLCTT SCVPFSSEAQ 240 LMQPPPNMEQ FSSKLENFSS QNCQVNEWQS NGVPLNLTDD YFAVQNYGYY HELDDSIRDR 300 PPSDASTFQS NDSNNFSFQS VLSNLSTPSS SPTPLNSNST YYNNSSSTTT EDERDSYCSN 360 MLNFDIPNIW DSTNEFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215365 | 1e-101 | AC215365.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0031A21, complete sequence. | |||
GenBank | AC215371 | 1e-101 | AC215371.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0059M17, complete sequence. | |||
GenBank | HG975514 | 1e-101 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016466799.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q9LDR8 | 1e-117 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1S3ZR66 | 0.0 | A0A1S3ZR66_TOBAC; protein ODORANT1-like | ||||
STRING | XP_009629473.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-114 | MYB-like 102 |
Publications ? help Back to Top | |||
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