PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016466699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 440aa MW: 48080.4 Da PI: 7.9891 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.4 | 7.2e-40 | 61 | 213 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsss 87 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+++ s ++++ss++ +++ XP_016466699.1 61 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPSLnafqdtqqiS--------EDKRSSAGTEQGL 147 689*************************************************************6554443221........2222222222222 PP TCP 88 g...............kaaksaakskksqksaasalnlak.esrakarararertrekmriknkln 137 + + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k+k+n XP_016466699.1 148 DsaevemdgdpnyqqhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEKEN 213 24445556666666756666666999999999999*****9*******************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-40 | 62 | 208 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.181 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.972 | 188 | 207 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MEVDEIQKQG CKFPRISNGN GRFESQDENE AVKGSNGLGG GGIGRLCGWP SNRSVRVSRA 60 SGGKDRHSKV WTSKGLRDRR VRLSVNTAIQ FYDLQDRLGY DQPSKAVEWL LKAAAPSISE 120 LPSLNAFQDT QQISEDKRSS AGTEQGLDSA EVEMDGDPNY QQHVSLSKSA CSSTSETSKG 180 SGLSLSRSEN RVKARERARE RAAEKEKEKE KENESTRTAH HQNVHRISQN SSFTELLTGG 240 MNNNITCNGR GSETNLFNKS PRQWSSSSPF DYFPSGLLGL RGNDNSTSGF QAQVHLGNPI 300 QQQPLPVSSP MFSITGDHPP ELQHFPFLSD HLGTNGHASN SANEYNLNFS ISSSSSSGLA 360 GYNRGTLQSN CSSLLPHFQR YEGSQSFFNG STIDAATAPN NTAAASVDNH HHFLSAYDAG 420 RLQLFYNDSR HSDQKGKGKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-24 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-24 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016466698.1 | 0.0 | PREDICTED: transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_016466699.1 | 0.0 | PREDICTED: transcription factor TCP2-like isoform X1 | ||||
TrEMBL | A0A1S3ZR15 | 0.0 | A0A1S3ZR15_TOBAC; transcription factor TCP2-like isoform X1 | ||||
STRING | XP_009784722.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 7e-37 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |