PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016466665.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 425aa MW: 47376.8 Da PI: 6.255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016466665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	339	379	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_016466665.1 339 ARQRRERISEKIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 379 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.193	330	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-14	335	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-13	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-10	336	384	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.7E-12	338	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-5	339	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MESLNWDESP VFQEFGDSFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCVEN 60 GFSSFPILNV PNYISGNNPM ALNDLMSDFS SNDHVQEIKP THKLLSNTCS LESLDCLLSA 120 TTTTNNTDTS IEDDGMSMIF ADNSKSLWNF NSSGESTHNA SSQALKQSPG YQQLLTCPSG 180 HKILEEEERK RKPYKPINGN ELDETVSQSS PNHKYNKRSH NQALENSPSE FNLFDSDSLN 240 GACGNFQLIS EKQAKSKKPR LITESYNKPR PSSSNINFQQ ASSSASSIDQ EPDPEAIAQM 300 KEMIYRAAAF RPVNFGPEAP EKPKRKNVRI STDPQTVAAR QRRERISEKI RVLQRLVPGG 360 SKMDTASMLD EAANYLKFLR SQVKALEAIG QKQDPFSSIP FNYPFPMQLP HFPLQNPNPI 420 HGPKS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MESLNWDESP VFQEFGDSFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCVEN  60
GFSSFPILNV PNYISGNNPM ALNDLMSDFS SNDHVQEIKP THKLLSNTCS LESLDCLLSA  120
TTTTNNTDTS IEDDGMSMIF ADNSKSLWNF NSSGESTHNA SSQALKQSPG YQQLLTCPSG  180
HKILEEEERK RKPYKPINGN ELDETVSQSS PNHKYNKRSH NQALENSPSE FNLFDSDSLN  240
GACGNFQLIS EKQAKSKKPR LITESYNKPR PSSSNINFQQ ASSSASSIDQ EPDPEAIAQM  300
KEMIYRAAAF RPVNFGPEAP EKPKRKNVRI STDPQTVAAR QRRERISEKI RVLQRLVPGG  360
SKMDTASMLD EAANYLKFLR SQVKALEAIG QKQDPFSSIP FNYPFPMQLP HFPLQNPNPI  420
HGPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	344	RQRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016466664.1	0.0	PREDICTED: transcription factor bHLH87-like
Refseq	XP_016466665.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	9e-78	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1S3ZQ54	0.0	A0A1S3ZQ54_TOBAC; transcription factor bHLH87-like
STRING	XP_009614250.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-68	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]