PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016466600.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 350aa MW: 39219.8 Da PI: 8.6912

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016466600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.6	1.2e-53	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkk+v++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ XP_016466600.1 16 LPPGFRFHPTDEELVVHYLKKRVASVPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTA 109 79**************************.88***********988899***********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl XP_016466600.1 110 gGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143 77788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-65	9	176	IPR003441	NAC domain
PROSITE profile	PS51005	62.339	16	176	IPR003441	NAC domain
Pfam	PF02365	5.1E-28	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MESTDSSSGS HQQPQLPPGF RFHPTDEELV VHYLKKRVAS VPLPVAIIAE VDLYKFDPWE 60 LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRLADNKANN KPPGCDVANK KSLRLDDWVL CRIYKKNNTQ 180 RPIDHERDDL NDIIGATCIP NNSMSMPNPF GQQKSSNYTT LLETHDQNIY DQGMQFSSKS 240 SSQLPVNVLS TSASVLPSKR SLTGLYWNEE ATANDNSQST KRFLTENINN MDDGLSMNLR 300 SDHDQNGSIA SLLSQLPQTP SLQQQQQQIL QGSLSDGVFR QPYSGINWYS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MESTDSSSGS HQQPQLPPGF RFHPTDEELV VHYLKKRVAS VPLPVAIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA  120
LVFYGGKPPK GVKTNWIMHE YRLADNKANN KPPGCDVANK KSLRLDDWVL CRIYKKNNTQ  180
RPIDHERDDL NDIIGATCIP NNSMSMPNPF GQQKSSNYTT LLETHDQNIY DQGMQFSSKS  240
SSQLPVNVLS TSASVLPSKR SLTGLYWNEE ATANDNSQST KRFLTENINN MDDGLSMNLR  300
SDHDQNGSIA SLLSQLPQTP SLQQQQQQIL QGSLSDGVFR QPYSGINWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-74	16	178	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016466600.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-114	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1S3ZPZ1	0.0	A0A1S3ZPZ1_TOBAC; NAC transcription factor 56-like
STRING	XP_009594217.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-110	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]